Despite making something of a name for themselves as the "nearly men" of the Third Division, manager Malky MacDonald made few changes to the Brentford squad for the fourth-consecutive off-season. The one major change at Brentford was that of the club's traditional red and white-striped shirts, which were passed over in favour of an amber shirt with a blue 'V' neck, due to the number of times the club would be forced to wear its change strip during the season. Negative feedback from the supporters ensured that the change of colours was a one-season experiment. Brentford started the 1960–61 season well and topped the table after winning the first two matches, but a 6–1 defeat to Watford at Vicarage Road on 30 August 1960 shook the team's confidence. The same XI atoned for that display with a 4–0 victory over Shrewsbury Town four days later, but the view had become prevalent around Griffin Park that some of Brentford's settled XI were past their peak. Manager MacDonald tinkered with his squad and bit-part, reserve or youth players Tommy Higginson, John Docherty, Ron Peplow and Johnny Hales were given runs in the team. Amidst a run of just two wins in 19 league matches, the new Football League Cup gave the Bees some cheer when Second Division club Sunderland were defeated 4–3 at Griffin Park in the club's first-ever match in the competition. The Bees were knocked out after a replay versus reigning Football League champions Burnley in the third round. A first round exit in the FA Cup in November ensured that the Third Division would be Brentford's sole focus for the remainder of the season. Brentford entered 1961 in 15th place in the Third Division, only three points above the relegation zone. Chairman Frank Davis posted a £7,000 loss, which took the club's debt over £50,000 and a players' strike was also a real possibility. In a bid to alleviate some of the club's debt, promising outside right John Docherty was sold to Sheffield United for a club record £17,000 in March 1961. The club rallied and lost just five of the remaining 21 matches of the season, but a failure to convert the 11 draws into wins ensured that Brentford finished in a lowly 17th place. Brentford's final match of the season versus Reading, although won 2–1, pushed the average league attendance at Griffin Park down to 7,392, which was the club's lowest since the 1924–25 season. The "Terrible Twins" had a mixed season, with Towers scoring 22 goals and Francis just 10, which led to him being dropped from the team in February 1961 – a decision which would have been considered unthinkable just six months earlier. Despite scoring 13 goals in 10 matches for the reserve team, Francis failed to earn a recall to the first team squad. Francis' replacement, teenager George Summers, scored six goals during the final months of the season.
