1998–99 Scottish Junior Cup
The 1998–99 Scottish Junior Cup was a competition in Scottish Junior football. It was won by Kilwinning Rangers after they defeated Kelty Hearts 1–0 in the final.First round
These ties were scheduled to take place on Saturday, TBC.
Second round
These ties were scheduled to take place on Saturday, TBC.
Third round
These ties were scheduled to take place on Saturday, TBC
Fourth round
These ties were scheduled to take place on Saturday, TBC.
Fifth round
These ties were scheduled to take place on Saturday, TBC.
These ties were played on Saturday, TBC.
| Home Team | Score | Away Team |
| Kelty Hearts | 7 – 1 | Montrose Roselea |
| Kilwinning Rangers | 1 – 1 | Auchinleck Talbot |
| Replay | 1 – 0 | - |
| Larkhall Thistle | 1 – 3 | Arthurlie |
| Maryhill | 0 – 1 | Petershill |
Semi-Finals
These ties were played on Saturday, TBC.
| Home Team | Score | Away Team | Venue |
| Kelty Hearts | 3 – 1 | Petershill | |
| Kilwinning Rangers | 1 – 0 | Arthurlie | |
Final
The final took place on Sunday, TBC.
| Home Team | Score | Away Team | Venue |
| Kilwinning Rangers | 1 – 0 | Kelty Hearts | |
