2006–07 UEFA Cup qualifying rounds
This article details the 2006–07 UEFA Cup qualifying rounds.
Round and draw dates
All draws held at UEFA headquarters in Nyon, Switzerland.| Round | Draw date and time | First leg | Second leg |
| First qualifying round | 23 June 2006 | 13 July 2006 | 27 July 2006 |
| Second qualifying round | 28 July 2006 | 10 August 2006 | 24 August 2006 |
Matches may also be played on Tuesdays or Wednesdays instead of the regular Thursdays due to scheduling conflicts.
Teams
Below are the 100 teams involved in the qualifying rounds, grouped by their starting rounds. The 32 winners of the second qualifying round qualified for the first round.| Key to colours |
| Qualified for the first round |
| Eliminated |
First qualifying round
Seeding
Matches
!colspan="5"|Southern-Mediterranean region!colspan="5"|Central-East region
!colspan="5"|Northern region
First leg
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Second leg
Tirana win 3–1 on aggregate----
CSKA Sofia win 5–1 on aggregate
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Litex Lovech win 6–0 on aggregate
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Sarajevo win 5–0 on aggregate
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Domžale win 7–0 on aggregate
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Dinamo București win 9–1 on aggregate
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APOEL win 7–1 on aggregate
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Omonia win 4–3 on aggregate
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Lokomotiv Sofia win 3–1 on aggregate
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Roeselare win 7–2 on aggregate
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Rapid București win 6–0 on aggregate
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Vaduz win 4–1 on aggregate
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Zimbru Chișinău win 3–2 on aggregate
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Young Boys win 4–1 on aggregate
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2–2 on aggregate, Videoton win on away goals
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1–1 on aggregate, Dinamo Minsk win on away goals
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Karvan win 2–0 on aggregate
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2–2 on aggregate, Ameri win on away goals
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BATE win 3–0 on aggregate
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Basel win 3–1 on aggregate
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Artmedia win 3–2 on aggregate
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Drogheda United win 4–2 on aggregate
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Brøndby win 3–1 on aggregate
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Llanelli win 2–1 on aggregate
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Skonto win 5–0 on aggregate
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Åtvidaberg win 7–0 on aggregate
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Ventspils win 4–1 on aggregate
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Brann win 2–0 on aggregate
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2–2 on aggregate, Randers win on away goals
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Kaunas win 4–1 on aggregate
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Sūduva win 2–1 on aggregate
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Levadia Tallinn win 2–1 on aggregate
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Start win 4–0 on aggregate
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1–1 on aggregate, Flora Tallinn win on away goals
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Derry City win 2–0 on aggregate
Second qualifying round
Seeding
Matches
!colspan="5"|Southern-Mediterranean region!colspan="5"|Central-East region
!colspan="5"|Northern region
First leg
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Second leg
Trabzonspor win 2–1 on aggregate----
Hapoel Tel Aviv win 4–2 on aggregate
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1–1 on aggregate, CSKA Sofia win on away goals
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Ethnikos Achna win 6–2 on aggregate
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Auxerre win 5–2 on aggregate
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Dinamo București win 2–1 on aggregate
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Partizan win 3–2 on aggregate
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Rapid București win 2–1 on aggregate
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Lokomotiv Sofia win 6–0 on aggregate
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Litex Lovech win 2–1 on aggregate
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Kayserispor win 5–1 on aggregate
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Artmedia win 5–3 on aggregate
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Sion win 1–0 on aggregate
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Grasshoppers win 3–1 on aggregate
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Slavia Prague win 2–0 on aggregate
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1–1 on aggregate, Chornomorets Odessa win on away goals
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2–2 on aggregate, Basel win on away goals
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Metalurh Zaporizhya win 3–0 on aggregate
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Wisła Kraków win 2–1 on aggregate
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Hertha BSC win 3–2 on aggregate
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Rubin Kazan win 5–0 on aggregate
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3–3 on aggregate, Marseille win on away goals
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1–1 on aggregate, Start win 11–10 on penalties
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Odense win 6–1 on aggregate
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Randers win 3–2 on aggregate
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Levadia Tallinn win 2–1 on aggregate
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Newcastle win 1–0 on aggregate
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4–4 on aggregate, Åtvidaberg win on away goals
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Molde win 2–1 on aggregate
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Brøndby win 4–0 on aggregate
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Club Brugge win 7–2 on aggregate
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Derry City win 7–3 on aggregate