This station opened on February 1, 1917, along with the rest of the Astoria Line, which was originally part of the IRT, as a spur off the IRT Queensboro Line, now the IRT Flushing Line. Trains ran between Grand Central and Astoria. On July 23, 1917, the Queensboro Bridge spur of the elevatedIRT Second Avenue Line opened. At that time, all elevated trains to Queensboro Plaza used the Astoria Line while all subway trains used the Corona Line, though this was later changed with trains alternating between branches. This station started to be served by BMT shuttles using elevated cars on April 8, 1923. On October 17, 1949, the Astoria Line became BMT-only as the tracks at Queensboro Plaza were consolidated and the platforms on the Astoria Line were shaved back to allow through BMT trains to operate on it. Service was initially provided by the Brighton Local weekdays & Broadway - Fourth Avenue Local at all times.
Station renovations
The platforms at this station, along with six others on the Astoria Line, were lengthened to to accommodate ten-car trains in 1950. The project cost $863,000. Signals on the line had to be modified to take into account the platform extensions. Under the 2015–2019 MTA Capital Plan, the station underwent a complete overhaul as part of the Enhanced Station Initiative and was entirely closed for several months. Updates included cellular service, Wi-Fi, USB charging stations, interactive service advisories and maps. The award for Package 2 of the renovations, which will cover renovations at the 30th Avenue, Broadway, 36th Avenue, and 39th Avenue stations, was awarded on April 14, 2017, to Skanska USA. This station, along with Broadway, closed entirely from July 2, 2018 and reopened on January 28, 2019. New station signage saying "39th Avenue–Dutch Kills" was installed after the Dutch KillsCivic Association requested it. Trains and subway maps still use the old "39th Avenue" name.
Station layout
This elevated station has three tracks and two side platforms. The center track is not used in revenue service, but it had been used regularly as recently as 2002. The center track merges with the two outer tracks south of this station. Both platforms have beige windscreens that run along their lengths and red canopies with green support columns in the center. The station signs are in the standard black name plate in white lettering.
Exits
This station has one elevated station house beneath the center of the platforms and tracks. Two staircases from each platform go down to a crossunder that has a news-stand and small turnstile bank. Outside fare control, there is a token booth and two staircases going down to the northwest and southeast corners of 39th Avenue and 31st Street. The lower base of the platform staircases have emergency gates leading directly to the top of the street stairs.