Incorporated into the Ottoman Empire in 1517 with the rest of Palestine, Al-Sawafir al-Shamaliya appears in the 1596 tax records as Sawafir al-Halil. It was under the administration of the nahiya of Gaza, part of the Liwa of Gaza. The village contained 112 households, 71 were Muslim and 41 Christians. With a total population of an estimated 616, the villagers paid a fixed tax-rate of 33,3 % on agricultural products, including wheat, barley, olive and fruit trees; a total of 19,550 akçe. All of the revenues went to a waqf. In 1838 the three Sawafir villages were noted located in the Gaza district. The western village was noted as "in ruins or deserted,” while the two others were noted as being Muslim. In 1863, French explorerVictor Guérin visited the village, which he estimated had five hundred inhabitants. He found three barrels of broken ancient columns of gray-white marble near a well. A koubbeh there was dedicated to a Sheikh Sidi Abd-Allah. An Ottoman village list of about 1870 found 55 houses and a population of 171, though the population count included men only. In 1882 the PEF's Survey of Western Palestine found that al-Sawafir al-Shamaliyya had several small gardens and wells.
In the 1922 census of Palestine conducted by the British Mandate authorities, the village had a population of 334 inhabitants, consisting of 333 Muslims and 1 Christian, increasing in the 1931 census to an all-Muslim population of 454 in 77 houses. In the 1945 statistics the population of Sawafir esh Shamaliya was 680 Muslims, while the total land area was 5,861 dunams, according to an official land and population survey. Of this, a total of 670 dunams were used citrus and bananas, 10 were for plantations and irrigable land, 4,894 for cereals, while 21 dunams were built-up areas. Many of its houses were built of adobe, although few were made of stone. The residents were Muslim, and the village had its own mosque, but shared a school with the neighboring villages of al-Sawafir al-Gharbiyya and al-Sawafir al-Sharqiyya. The number of students in the school was 280 in the mid-1940s. Agriculture was the mainstay of the economy, and grain, citrus, grapes, and apricots were grown.
In early May, 1948, the inhabitants of the three Al-Sawafir villages were ordered not to flee, by the Al-MajdalNational Committee. Al-Sawafir al-Shamaliyya was captured by the Haganah in Operation Barak on May 12. Its residents may have been pushed out by the attack on Bayt Daras on May 10 which was preceded by a mortar attack, but it's more likely that the village was depopulated on the attack of the village itself, according to an Associated Press dispatch which quoted a Haganah source. At the 23 May, 1948, Israeli reports say that at all the three Al-Sawafir villages the inhabitants slept in the fields at night, but returned to work in the villages by day. At the near end of the 1948 Arab-Israeli War, Egyptian and Sudanese forces planned to recapture al-Sawafir al-Shamaliyya, but were prevented from doing so at an early stage. Following the war the area was incorporated into the State of Israel, but the land was left undeveloped. According to Palestinian historian, Walid Khalidi, "A few vacant houses and segments of houses, standing amidst wild vegetation, mark the site. One of them has a covered porch supported on two columns. An old village road is also identifiable, and cactuses and fig trees grow on the site."
