In the early 1200, the revenues from Beit Liqya were given as a waqf designated for the Al-Haram al-Sharif.
Ottoman era
Beit Liqya, like the rest of Palestine, was incorporated into the Ottoman Empire in 1517, and in 1557 the revenues of the village were designated for the new waqf of Hasseki Sultan Imaret in Jerusalem, established by Hasseki Hurrem Sultan, the wife of Suleiman the Magnificent. In 1838 Beit Lukia was noted as a Muslim village, located in the Beni Malik area, west of Jerusalem. The French explorerVictor Guérin visited the village in the 1863, and estimated that it had around five hundred inhabitants. He also noted a wali for a Sheikh Abou Ismail. An official Ottoman village list from about 1870, showed that "Bet Lukja" had a total of 109 houses and a population of 347, though the population count included only men. In 1883, the PEF's Survey of Western Palestine described Beit Likia as a "small village on a main road at the foot of the hills, supplied by cisterns. There are ancient foundations among the houses."
In the 1922 census of Palestine conducted by the British Mandate authorities, Beit Leqia had a population of 739, all Muslim, increasing by the time of 1931 census, when Beit Liqya had 209 occupied houses and a population of 858, still all Muslim. In the 1945 statistics the population was 1,040, all Muslims, while the total land area was 14,358 dunams, according to an official land and population survey. Of this, 1,918 were allocated for plantations and irrigable land, 6,469 for cereals, while 39 dunams were classified as built-up areas.
Since the Six-Day War in 1967, Beit Liqya has been under Israeli occupation. After the 1995 accords, 10.4% of the land of Beit Liqya was classified as Area B, the remaining 89.6% as Area C. Jamal 'Asi and U'dai 'Asi were killed by the Israeli Army in 2005 near the Israeli West Bank barrier. UN Secretary-GeneralKofi Annan welcomed Israel's announcement that an involved IDF officer was suspended, and that a full investigation of the incident would take place. Later the same year, their 15-year-old cousin Mahyoub al-Asi was killed by a civilian security guard, "whom he knew." He was tending the family vineyard. His brother was also killed by a mine explosion near the village several years ago. On October 16, 2014, Israeli forces shot and killed the 13-year-old Palestinian boy Bahaa Badr in the village near the dividing line with Israel. Bahaa Badr was shot in the chest and died 20 minutes after arriving at the hospital.