The Lewis and Clark Expedition passed through parts of what are now forest lands in 1805. After the discovery of gold in Idaho and then Montana in the 1860s, numerous mining towns were built, some of which today are ghost towns. The Nez Perce National Historic Trail passes through a portion of the forest, following the route of the retreating Nez Perce on their historic path that led from Idaho to north central Montana in 1877. Heavy logging and other resource depletion beginning in the 1880s led conservationists to push for the preservation of the forest. The Bitter Root Forest Reserve was established by the General Land Office on March 1, 1898 with. It was transferred to the U.S. Forest Service in 1906. On July 1, 1908 the name was changed to Bitterroot National Forest, with lands added from Big Hole National Forest and Hell Gate National Forest. Other lands were transferred from Bitterroot to Beaverhead, Clearwater, Nez Perce and Salmon National Forests. On October 29, 1934 part of Selway National Forest was added. In August 2016, a wildfire burnt down fourteen houses.
The forest is a combination of both grasslands and forested zones. Grazing rights are leased to private landowners in the lower altitudes where grasses and shrublands are dominant. Higher up, Douglas fir, larch, and lodgepole pine slowly give way to Engelmann Spruce and whitebark pine as the altitude increases. Above the treeline at 8,000 feet the trees abruptly end and alpine flowers and grasses are found. A small grizzly bear population is located in the wilderness zones of the forest with black bear, mountain goat, bighorn sheep, elk and moose found all over this forest. An active effort to reintroduce the grizzly bear to the region concluded in 2000 with a plan to release 25 bears into the wilderness zones over a five-year period beginning in 2003. There are 1,600 mi of trails and 18 improved campgrounds within the forest. Outstanding fishing is found in the dozens of rivers and streams and lakes. The forest headquarters is located in Hamilton, Montana. There are local ranger district offices in Darby, Stevensville, and Sula. The largest nearby city is Missoula, Montana. The scenic Blodgett Canyon is but one of many steep canyons located in the forest. U.S. Highway 93 passes through portions of the forest.
There are three officially designated wilderness areas in Bitterroot National Forest that are part of the National Wilderness Preservation System. All of them, however, lie mostly in neighboring National Forests, as indicated.
Much of the forest outside of designated wilderness areas is still roadless and undeveloped. In addition to roadless acreage adjacent to designated wildernesses, a large roadless area 164,000 acres in size and straddling the Montana-Idaho state line exists just west of Lost Trail Pass. This area, named for 9,154' Allan Mountain, lies mostly in Montana and is critical to the migration of wildlife between the wildlands of central Idaho and the Greater Yellowstone Ecosystem. The Allan Mountain area is a lower-elevation part of the Bitterroot Range that features extensive coniferous forests, steep canyons, and pockets of old-growthponderosa pine and Douglas-fir. Within the area is Overwhich Falls, a popular attraction; hiker's gentian and primrose monkey flower, sensitive plants, are found here in wet meadows. Elk, black bear, mountain goat, pine marten, and pileated woodpecker are residents.