In October 1936, a resolution was passed during the centenary celebrations of the Baptist mission in China to engage in the extension of work to the frontier regions, which then included Taiwan which was a part of Japan. With the retrocession of Taiwan to China following the surrender of Japan in 1945, plans were made to expand the mission to Taiwan. A visit was made by a Shanghai missionary, Lila Florence Watson, in February 1948. In 1948, the National Baptist Convention of China was established in Shanghai and Yang Mei Chai was sent to Taiwan to establish a frontier mission in June of the same year. Yang was also appointed the head of the Taiwan district of the national convention. Bertha Smith of the American Southern Baptist Mission in Shantung arrived in Taiwan on October 19, 1948 and the first church was inaugurated on December 26 of the same year.
Local ministry
In the 1950s, the CBC saw an influx of missionaries and refugees from the mainland. This led to the rapid growth of the church particularly in the Mandarin language ministry with significant support from the Southern Baptist Convention in the United States. The first Taiwanese Hokkien service was conducted in at the Amoy StreetBaptist Church. In February 1957, the first Taiwanese congregation was established as the Mu Yi Church. Work among the Hakkas began in 1958 in Miaoli and further work was planted in Pingtung. Work began with the aboriginal peoples of Taiwan as early as 1951 in Liouguei, Kaohsiung with the establishment of the Liouguei Baptist Church. Work in languages apart from Mandarin was however generally slow due to the lack of standard materials and work among the aboriginal people was not significant until the first Ami pastor graduated from the Taiwan Baptist Theological Seminary in 1982.
Later developments
From the period of 1948 to 1954, a total of 11 churches and 22 outreach points had been established by Baptist missionaries and workers. On July 5, 1954, the Taiwan Baptist Association was established. It was later renamed the Chinese Baptist Church, Taiwan Province Convention and the Chinese Baptist Church, Taiwan Convention before assuming its current name in 1972. Similar to Baptist churches elsewhere, churches affiliated with the CBC are autonomous and self-governed and the CBC doesn't exercise any executive authority. The CBC's role is primarily in the coordination of work among the associated churches and the management of inter-church institutions.
The seminary was established in 1952 for the training of national workers. Until recently the seminary had faced problems from the authorities as it was an unrecognized institution and had faced accusations of awarding fraudulent academic degrees in the past. In 2005, the Legislative Yuan passed a resolution to provide for the framework of recognition of religious academic institutions and seminaries allowing the seminary to initiate the procedure of gaining full recognition from the authorities.