Chromosome 5
Chromosome 5 is one of the 23 pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 5 spans about 181 million base pairs and represents almost 6% of the total DNA in cells. Chromosome 5 is the 5th largest human chromosome, yet has one of the lowest gene densities. This is partially explained by numerous gene-poor regions that display a remarkable degree of non-coding and syntenic conservation with non-mammalian vertebrates, suggesting they are functionally constrained.
Because chromosome 5 is responsible for many forms of growth and development changes may cause cancers. One example would be acute myeloid leukemia.
Genes
Number of genes
The following are some of the gene count estimates of human chromosome 5. Because researchers use different approaches to genome annotation their predictions of the number of genes on each chromosome varies. Among various projects, the collaborative consensus coding sequence project takes an extremely conservative strategy. So CCDS's gene number prediction represents a lower bound on the total number of human protein-coding genes.Estimated by | Protein-coding genes | Non-coding RNA genes | Pseudogenes | Source | Release date |
CCDS | 839 | — | — | 2016-09-08 | |
HGNC | 790 | 355 | 574 | 2017-05-12 | |
Ensembl | 882 | 1,207 | 707 | 2017-03-29 | |
UniProt | 875 | — | — | 2018-02-28 | |
NCBI | 886 | 981 | 785 | 2017-05-19 |
Gene list
The following is a partial list of genes on human chromosome 5. For complete list, see the link in the infobox on the right.Diseases and disorders
The following are some of the diseases related to genes located on chromosome 5:- Achondrogenesis type 1B
- Atelosteogenesis, type II
- Bosch-Boonstra-Schaaf optic atrophy syndrome
- Charcot–Marie–Tooth disease, type 4
- Cockayne syndrome
- Cornelia de Lange syndrome
- Corneal dystrophy of Bowman layer
- Cri du chat
- Diastrophic dysplasia
- Ehlers-Danlos syndrome
- Familial adenomatous polyposis
- Granular corneal dystrophy type I
- Granular corneal dystrophy type II
- GM2-gangliosidosis, AB variant
- Homocystinuria
- 3-Methylcrotonyl-CoA carboxylase deficiency
- Myelodysplastic syndrome
- Netherton syndrome
- Nicotine dependency
- Parkinson's disease
- Primary carnitine deficiency
- Recessive multiple epiphyseal dysplasia
- Sandhoff disease
- Spinal muscular atrophy
- Sotos Syndrome
- Survival motor neuron spinal muscular atrophy
- Treacher Collins syndrome
- Tricho-hepato-enteric syndrome
- Usher syndrome
Chromosomal conditions
- Cri-du-chat syndrome is caused by a deletion of the end of the short arm of chromosome 5. This chromosomal change is written as 5p-. The signs and symptoms of cri-du-chat syndrome are probably related to the loss of multiple genes in this region. Researchers have not identified all of these genes or determined how their loss leads to the features of the disorder. They have discovered, however, that a larger deletion tends to result in more severe mental retardation and developmental delays in people with cri-du-chat syndrome.
- Familial Adenomatous Polyposis is caused by a deletion of the APC tumor suppressor gene on the long arm of chromosome 5. This chromosomal change results in thousands of colonic polyps which gives the patient a 100% risk of colon cancer if total colectomy is not done.
- Chromosome 5q deletion syndrome is caused by the deletion of the q arm of chromosome 5. This deletion has been linked to several blood related disorders including Myelodysplastic syndrome and Erythroblastopenia. This is a different condition than Cri-du-chat which was mentioned above.
- Other changes in the number or structure of chromosome 5 can have a variety of effects, including delayed growth and development, distinctive facial features, birth defects, and other medical problems. Changes to chromosome 5 include an extra segment of the short or long arm of the chromosome in each cell, a missing segment of the long arm of the chromosome in each cell, and a circular structure called ring chromosome 5. A ring chromosome occurs when both ends of a broken chromosome are reunited.
Cytogenetic band
Chr. | Arm | Band | ISCN start | ISCN stop | Basepair start | Basepair stop | Stain | Density |
5 | p | 15.33 | 0 | 278 | gneg | |||
5 | p | 15.32 | 278 | 401 | gpos | 25 | ||
5 | p | 15.31 | 401 | 555 | gneg | |||
5 | p | 15.2 | 555 | 802 | gpos | 50 | ||
5 | p | 15.1 | 802 | 972 | gneg | |||
5 | p | 14.3 | 972 | 1234 | gpos | 100 | ||
5 | p | 14.2 | 1234 | 1281 | gneg | |||
5 | p | 14.1 | 1281 | 1543 | gpos | 100 | ||
5 | p | 13.3 | 1543 | 1836 | gneg | |||
5 | p | 13.2 | 1836 | 2068 | gpos | 25 | ||
5 | p | 13.1 | 2068 | 2253 | gneg | |||
5 | p | 12 | 2253 | 2407 | gpos | 50 | ||
5 | p | 11 | 2407 | 2592 | acen | |||
5 | q | 11.1 | 2592 | 2839 | acen | |||
5 | q | 11.2 | 2839 | 3271 | gneg | |||
5 | q | 12.1 | 3271 | 3518 | gpos | 75 | ||
5 | q | 12.2 | 3518 | 3580 | gneg | |||
5 | q | 12.3 | 3580 | 3765 | gpos | 75 | ||
5 | q | 13.1 | 3765 | 4012 | gneg | |||
5 | q | 13.2 | 4012 | 4197 | gpos | 50 | ||
5 | q | 13.3 | 4197 | 4397 | gneg | |||
5 | q | 14.1 | 4397 | 4752 | gpos | 50 | ||
5 | q | 14.2 | 4752 | 4907 | gneg | |||
5 | q | 14.3 | 4907 | 5400 | gpos | 100 | ||
5 | q | 15 | 5400 | 5678 | gneg | |||
5 | q | 21.1 | 5678 | 5879 | gpos | 100 | ||
5 | q | 21.2 | 5879 | 5987 | gneg | |||
5 | q | 21.3 | 5987 | 6295 | gpos | 100 | ||
5 | q | 22.1 | 6295 | 6419 | gneg | |||
5 | q | 22.2 | 6419 | 6527 | gpos | 50 | ||
5 | q | 22.3 | 6527 | 6666 | gneg | |||
5 | q | 23.1 | 6666 | 6943 | gpos | 100 | ||
5 | q | 23.2 | 6943 | 7267 | gneg | |||
5 | q | 23.3 | 7267 | 7468 | gpos | 100 | ||
5 | q | 31.1 | 7468 | 7807 | gneg | |||
5 | q | 31.2 | 7807 | 8008 | gpos | 25 | ||
5 | q | 31.3 | 8008 | 8316 | gneg | |||
5 | q | 32 | 8316 | 8625 | gpos | 75 | ||
5 | q | 33.1 | 8625 | 8887 | gneg | |||
5 | q | 33.2 | 8887 | 9072 | gpos | 50 | ||
5 | q | 33.3 | 9072 | 9304 | gneg | |||
5 | q | 34 | 9304 | 9690 | gpos | 100 | ||
5 | q | 35.1 | 9690 | 9952 | gneg | |||
5 | q | 35.2 | 9952 | 10183 | gpos | 25 | ||
5 | q | 35.3 | 10183 | 10600 | gneg |