Genostar

Software

Sequence assembly

• Mapping of an ensemble of sequences on a reference sequence
• between a reference sequence and contigs, between two sequences or between two sets of sequences
• finding of exact matches with minimum length using MUMmer
• detection of specific regions and SNPs
• creation of an assembled sequence relative to reference sequences

  Genomic annotation

• Gene prediction: ab-initio gene prediction using a Hidden Markov model based method
• BlastX
• Automatic annotation transfer using BlastP

  Proteic annotation

• Pfam domain prediction using HMMER
• Several EMBOSS methods

  Expression Data Solution (EDS)

• Assign expression values to the gene names and IDs
• Identify co-expressed genes and visually analyze the reactions and metabolic pathways in which they are involved
• Identify and perform analysis on co-regulated genes in terms of genomic localization, functional annotation and metabolism
• Colorize CDSs of interest in genomic maps according to their expression values and highlight the corresponding reactions in interactive metabolic KEGG maps
• Analyze the significance of functional data of a collection or sub-collection of CDSs : Fisher test
• Collect and visualize all functional data in exportable tables and maps

  Database

Industrial Partners

• ChemAxon

• Academic Partners

• INRIA
• Swiss Institute of Bioinformatics