Born in Middlesbrough, North Yorkshire, Lee started his career at Hartlepool United, notching up almost 300 appearances at centre back and helping the club secure promotion to the Second Division. Lee also played as a striker for Hartlepool, scoring twenty goals for the club.
Sheffield Wednesday
In 2003, he was snapped up by former boss Chris Turner for Sheffield Wednesday. He made 67 appearances for Wednesday and scored five goals in his first season and took up the captain's arm band when Dean Smith was injured, this made him a shining light in one of the Owl's worst ever seasons which led to him picking up a fans' player of the season award. Lee started the 2004–05 season in the same vein as he ended the last. Although dogged by injuries at the tail end of the season he was voted defender of the year by fans of the club.
Doncaster Rovers
Lee was deemed as not good enough for the Championship following the side's promotion by Paul Sturrock and signed for Doncaster Rovers from Sheffield Wednesday for £50,000 in 2005. He was Rovers' captain. He scored the winning goal in their 3–2 win over Bristol Rovers in the 2007 Football League Trophy final at Cardiff's Millennium Stadium. At the start of the 2007–08 season, he was ruled out for six weeks with a neck problem, and when he returned he was sidelined for another four months because of a fractured knee. Instead on 14 February 2008, Lee signed for former club Hartlepool United on loan for one-month. Following his return to the Keepmoat Stadium, Lee was loaned out again, this time to Shrewsbury Town until the end of the season. He was recalled with two games remaining, after a series of injuries had left Rovers short of defensive cover. In June 2008, after a season in which he was limited to a couple of substitute performances, Lee was released by Doncaster Rovers.
Bradford City
On 30 June 2008, he signed a two-year deal with League Two side Bradford City. On 6 August 2008, Lee was made Bradford City club captain for the 2008–09 season, taking over from David Wetherall, who had retired at the end of the previous season. At the same time, he said it was his goal to lift the league title. He was one of four Bradford players to make his debut on the opening day of the 2008–09 season against Notts County, which Bradford won 2–1. His first goal for the club came in a 3–1 victory at Grimsby Town on 24 October 2008, having played in all City's opening 13 league games of the season. Two weeks later he added a second goal, helping City to upset League One-side Milton Keynes Dons 2–1 in the FA Cup. He played in the club's first 34 league and cup games of the season, before he missed his first game in February because of suspension from picking up five bookings.
Lee then signed for Darlington on a one-year deal on 30 June 2011. Darlington suffered financial difficulties during Lee's time at the club and his contract was terminated on 16 January 2012, along with the rest of the playing squad and caretaker manager Craig Liddle. However, despite the ongoing financial and contractual issues at Darlington, Lee continued to play on until a knee injury ruled him out for the remainder of the season. Lee joined Celtic Nation during the 2012/13 close season break.
