Tytler has been accused of involvement in the 1984 anti-Sikh riots in India, a charge that he denies. The riots had occurred after Sikh bodyguards assassinated Indian Prime Minister Indira Gandhi. Tytler stated that he was present at Teen Murti Bhavan for the funeral ceremony with Gandhi's body and was in mourning at the time when these events occurred at Gurudwara Pulbangash, situated near Azad Market. He has not been charged with any crimes related to the 1984 riots. In April 2004, the Indian National Congress announced Jagdish Tytler as its candidates for Indian Parliament elections for constituencies in and around Delhi. In 2019, Tytler said of the controversy surrounding the anti-Sikh riot accusations that
Nanavati Commission
The report of the Nanavati Commission looking into the 1984 anti-Sikh riots said that Tytler "very probably" had a hand in organising the attacks. The then Congress-led Government of India, however, decided not to prosecute him or anyone else named in the report due to lack of concrete evidence. Tytler, who had been appointed minister of state with independent charge of non-resident affairs, claimed innocence, saying that it was a case of mistaken identity. He said he had not been in the area at the time and that eight earlier commissions of inquiry had exonerated him. On 10 August 2005, he resigned from the Union Council of Ministers, stating that it was his "moral duty" to do so to prevent opposition parties making political capital out of the situation following release of the Nanavati report.
Defamation allegations
In 2004, lawyer H. S. Phoolka filed a case in the Ludhiana court against Tytler, accusing Tytler of defaming him during a television programme in the same year. In 2014, Phoolka declined an "unconditional apology" from Tytler as a proposed settlement. The court framed charges against Tytler in 2015. As of July 2018, no verdict had been reached.
Reopening of the case in 2007
India's Central Bureau of Investigation closed all cases against Tytler in November 2007 for his alleged criminal conspiracy to engineer riots against Sikhs in the aftermath of Indira Gandhi's assassination on 31 October 1984. The CBI submitted a report to the Delhi court which stated that no evidence or witness had been found to corroborate the allegations of instigating crowd during riot against Tytler. On 18 December 2007, the Additional Chief Metropolitan Magistrate of Delhi court, Sanjeev Jain, who had earlier dismissed the case after the CBI's report to his court, ordered the CBI to reopen cases against Tytler relating to the riots.
Clean chit by CBI
In March 2009, the CBI filed its final report on investigation into the riots cases and cleared Jagdish Tytler. The BJP which was then in opposition alleged that "such a ahead of the elections" implied that the CBI had been misused. On 2 April, CBI claimed there was lack of sufficient evidence against Tytler and sought to close the riot case. On 7 April 2009, the then Home Minister, P. Chidambaram, had a shoe thrown at him by Jarnail Singh, a Sikh journalist, during a press conference in Delhi. Singh, who works at the Hindi daily Dainik Jagran, was dissatisfied with Chidambaram's answer to a question about the "clean chit" given to Tytler. In 2010, CBI reiterated the clean chit to Tytler.
Denial of Lok Sabha ticket
After the shoe throwing incident, the Congress party dropped both Tytler and Sajjan Kumar as Congress candidates for the Lok Sabha elections of 2009. Tytler accused the media of victimizing him through a media trial. Tytler blamed the Shiromani Akali Dal and his "enemies" within the Congress party for scuttling his nomination.
Reiteration of CBI clean chit in 2010
In February 2010, at a Delhi court before Additional Chief Metropolitan Magistrate Rakesh Pandit, the CBI concluded its arguments stating that the witness’ statements were "false and concocted", CBI supported its closure report that gave a clean chit to Tytler in the riots case. The CBI prosecutor stated that "The version of Jasbir Singh is absolutely false and concocted. He has made statements with an intention to falsely implicate Tytler." CBI had examined another witness Surender Singh and his family members who stated that the statements of the witness were not correct. CBI had produced a CD before the court to prove that Tytler was not at the location of riot but was present at the residence of Indira Gandhi.
In April 2013, a Sessions Court rejected the CBI report and ordered investigation against Tytler. Witnesses in the subsequent investigation have included Abhishek Verma and Amitabh Bachchan.