The militants were able to claim a safe haven in the most sacred place for the Sikhs due to the whole or part support received by them from the key Sikh religious leaders and institutions such as the SGPC, AISSF and Jathedar of the Akal Takht. The support was either voluntary or forced by using violence or threat of violence. The evidence of resorting to violence was found by the security forces later on after Operation Black Thunder when hundreds of bodies of tortured and killed opponents were found buried under the Akal Takht and other places. The Golden temple complex afforded the militants based inside a facade of fighting a "holy war". It also provided the militants access to new potential recruits from among the visitors. Several multi storied buildings were located around the Parikrama around the reservoir of the temple that provided rooms and offices that were taken over by the militants. The temple complex also provided logistical advantage to the militants with easy access to food, water and communication lines. Further the sanctity of the Golden temple provided protection from arrests by the security forces who preferred not to enter the Temple premises so as not to hurt the religious sentiments of the Sikhs. Even the spies were not being sent due to the fear of them being captured, tortured and killed inside.
Operation Black Thunder I
The first Operation Black Thunder took place on 30 April 1986. About 200 radical Sikh militants had been occupying the temple premises for the last 3 months. The operation was commanded by Julio_Ribeiro_, who was the DGP of Punjab. The police operation was initiated one day after the radicals occupying the temple declared the formation of the independent Sikh nation of Khalistan. About 300 National Security Guards commandos stormed the Golden Temple, the holiest shrine of the Sikhs, along with 700 Border Security Force troops and captured about 200 Sikh militants. One person was killed and two were injured. During the progress of the operation no major resistance was reported at any point. About 70 radicals led by a religious fundamentalist had taken shelter in a holy sanctuary in the Golden temple. All of them finally surrendered just before dawn. The operation, which lasted eight hours, was approved by then Chief minister of Punjab Surjit Singh Barnala of Shiromani Akali Dal. The operation had full support by moderate Sikh leaders and several leaders praised the police action for flushing out terrorists, separatists and anti-faith elements.
Operation Black Thunder II
Operation Black Thunder II began on 9 May 1988 in Amritsar and ended with the surrender of the militants on 18 May. The operation was commanded by Kanwar Pal Singh Gill who was the DGP of Punjab Police. Snipers were used in this operation. Compared to Operation Blue Star, little damage was inflicted on the Golden Temple. In what was reported as a successful operation, around 200 militants surrendered, 41 were killed. Gill stated that he did not want to repeat the mistakes made by the Indian army during Operation Blue Star. This operation was described as a severe setback to the Anandpur Resolution implementation movement. In contrast to prior operations, minimum force was used under full public scrutiny. It is remembered for the free access the news media was provided unlike during Operation Blue Star. The day after the militants surrendered, nine reporters were allowed into the Temple complex. Kirtan was resumed at the Golden Temple on 23 May 1988 after a two-week break during this operation. While Operation Blue Star was widely considered poorly executed and shambolic because of the egregious loss of civilian lives and the damage done to both the Golden Temple and Sikh relations with the government, Operation Black Thunder was far more successful with the blockade tactics paying dividends, and has been credited with breaking the back of the Sikh separatist movement. Soon after this operation, the Indian Government banned the use of religious shrines for political and military purposes and increased penalties for the possession and use of illegal weapons, as part of its strategy to fight extremism in the Punjab region. In 2002, Sarabjit Singh, then Deputy Commissioner of Amritsar at the time published a book "Operation Black Thunder: An Eyewitness Account of Terrorism in Punjab". The account was criticised by Kanwar Pal Singh Gill who claimed that the operation was initially called "Operation Gill" before being renamed "Operation Black Thunder".