On 7 August 1981, Father General Pedro Arrupe suffered a severe stroke in the plane on his way back to Rome. Although he survived for another ten years, he wanted to step down as Superior General. Though Arrupe proposed Vincent O'Keefe of Fordham University as interim successor, Pope John Paul II intervened and named Paolo Dezza his delegate to lead the order for an interim period. Two years later John Paul II allowed the Jesuits to proceed in selecting their new leader. Meeting in September 1983, the 33rd General Congregation of the Society of Jesus accepted the formal resignation of Father Arrupe and on the first ballot elected Father Kolvenbach to be 29th Superior General of the Jesuits. Kolvenbachtook office at a time when the Jesuits' "strongly pro-social justice and church reform orientation was seen by critics as having made the Jesuits something akin to John Paul’s in-house opposition....Over time, Kolvenbach was credited with having managed to win back the trust of John Paul II and his Vatican team, without alienating the more liberal members of the order." He is credited with successfully defending French Jesuit theologian Jacques Dupuis from charges made by the Congregation for the Doctrine of the Faith, and Fr. Thomas J. Reese who was removed as editor of America magazine by the insistence of the Vatican says that he “always felt that Kolvenbach did everything he could to defend me." He manifested his personal interest in each Jesuit's work, with an interest in meeting each Jesuit individually.” He traveled extensively to visit Jesuits in 112 countries, and “his knowledge of them and their ministries is legendary.” He also emphasized the need to make laypersons feel their place of equal partnership in Jesuit ministries, recognizing with Vatican II that “holiness is one - that sanctity is cultivated by all who are moved by the Spirit of God'." He expressed his belief that “the church of the next millennium will be called the 'church of the laity'...this development is a 'grace of our day and a hope for the future'."
Resignation and retirement
On 2 February 2006, Kolvenbach informed the members of the Society of Jesus that he intended to step down in 2008, the year he would turn 80. As the Superior General is elected for life, Kolvenbach was only the second to resign the office. The 35th General Congregation of the Society of Jesus convened on 5 January 2008 in Rome. On 14 January it accepted Kolvenbach's resignation and elected Adolfo Nicolás as his successor. Kolvenbach died in Beirut on 26 November 2016 and is buried outside Beirut on the grounds of Collège Notre Dame de Jamhour.