Khan suffered financial losses in the September 2008bankruptcy of Lehman Brothers due to his investments in so-called "Minibonds" – structured financial products similar to equity-linked notes which were marketed to many members of the Hong Kong public with claims of being a safe and low-risk product. In the aftermath, he became involved in efforts to gain compensation for affected noteholders. In November 2008, Khan organised a protest march from Sogo Department Store in Causeway Bay to the Central Government Offices in Central; attendees shouted slogans calling for then-Chief Executive of Hong Kong Donald Tsang to step down and criticising the opacity of the banks' operations. The following month, when former US president Bill Clinton visited Hong Kong for the first annual meeting of the Clinton Foundation, Khan organised protests outside of the Grand Hyatt Hong Kong where Clinton was staying, in an attempt to draw attention to the issue. Roughly 90 people attended the protests. Khan continued leading protest activities throughout 2009 and 2010. In January 2009, Khan and four fellow protestors collected signatures from over two thousand affected noteholders and set off for neighbouring Macau to submit a petition to then-Vice-President of the People's Republic of ChinaXi Jinping, who was visiting the city. In 2010, after Standard Chartered admitted that they had made errors in estimating the risk associated with Minibonds, Khan led a protest outside of the Legislative Council Building, during which he stood in the middle of the street in an attempt to block a Standard Chartered company bus from departing the scene.
Naturalisation attempts
Khan has twice attempted to submit applications to the Hong Kong Immigration Department for naturalisation as a Chinese national; however, each time, the immigration officer on duty refused to accept his papers, stating that he did not have a close relative who was a Chinese national. According to an Immigration Department spokesperson, applications will be taken from all persons submitting them, but under the, the Department is not required to inform the applicant of the reason for rejection. His inability to naturalise has also meant he cannot obtain a Home Return Permit for travel to mainland China; instead, he has to use his passport, waiting in line at immigration control at Luohu Port for more than half an hour each time and quickly running out of pages for passport stamps, requiring him to pay additional fees to add pages to his passport or renew it. News of Khan's troubles prompted Equal Opportunities Commission Chairman Lam Woon-kwong to write a letter of concern to the Immigration Department. In December 2012, Khan organised public protests over the issue, marching and holding signs at the Central Government Complex in Tamar with roughly twenty other South Asians whose applications for naturalisation had similarly been rejected.
Water cannon incident
Phillip Khan was one of the victims of the Water cannon incident on October 20, 2019. The Police's water cannon attacked Kowloon Mosque on that day and Phillip Khan was one of the victims being shot. Other victims include Jeremy Tam and Mohan Chugani. Khan said that the attack was an insult against Islam.