In 1917, Boeckel made his MLB debut with the Pittsburgh Pirates. During his first game, he had to be carried off the field due to heat prostration. He returned to the field two days later and was struck in the head by a line drive. The head wound required several stitches and he missed another week of play. He played in 65 games for Pittsburgh that year, hitting.265 and tallying 23 runs batted in. Before the 1918 season, Boeckel lost. Pittsburgh manager Hugo Bezdek was pleased and said that Boeckel's weight had been an impediment the previous year. However, Boeckel missed the season after enlisting in the navy. Pittsburgh acquired third basemanWalter Barbare in 1919, so the team placed Boeckel on waivers early in the season. He was obtained off waivers by the Boston Braves. Between the two teams, Boeckel appeared in 140 games that season. He was one of three NL players to reach that number of games played. In 1920, Boeckel had eleven at bats in the record-breaking 26-inning game between the Braves and the Brooklyn Dodgers. His sixth-inning single accounted for Boston's only RBI and the game was later declared a tie when it became too dark to continue. Boeckel reached career highs in several offensive categories in 1921. He batted.313 with 10 home runs and 84 RBI. He also registered 20 stolen bases, nearly matching his career high of 21 steals. In 1922, Boeckel struggled with a toe injury. He aggravated the injury during the following preseason, but a newspaper report at the time called him "a mighty fine ball player when the veteran is right." A collegiate player named Arthur Conlon briefly challenged Boeckel for the third base position in 1923, but Conlon's play fizzled and Boeckel remained the starter. Boeckel struggled at times with defensive mishaps. He led the league three times in errors by a third baseman. Boeckel played with the Braves from 1919 to 1923; during those seasons, the team did not finish higher than fourth place in the league standings.
Death
On February 15, 1924, Boeckel was severely injured in an auto accident in San Diego. He died the next day. Braves club secretary Edwin L. Riley referred to Boeckel's death as a "real personal loss" and he indicated that Boeckel was also close to club president Christy Mathewson. The Braves wore mourning bands in 1924 to honor Boeckel. A bronze tablet at Braves Field was later dedicated to Boeckel's memory.