Atherton began shakedown in September, 1943. During this time, conducted exercises in Chesapeake Bay and made two cruises to Bermuda. On 13 November 1943, she got underway for Puerto Rico. Upon her arrival there, the destroyer escort assumed anti-submarine warfarepatrol duties in waters between St. Croix, Virgin Islands, and the Anegada Passage. On 24 November, she attacked a submarine contact, but observed no evidence of damage. The ship was relieved three days later and returned to Norfolk on 30 November 1943. There, she began making daily cruises in Chesapeake Bay to train prospective crew members for destroyer escorts. Atherton left Norfolk on 11 December 1943 to escort a convoy bound for the Panama Canal but was back in Hampton Roads on 27 December 1943. From January 1944 to May 1945, Atherton operated under the control of Task Force 62 on escort duty for transatlantic convoys. She escorted convoys from Norfolk and New York City to various ports in the Mediterranean. These ports included Casablanca, Morocco; Bizerte, Tunisia; and Oran, Algeria. Atherton periodically reported to the Boston Navy Yard for overhaul.
Sinking of ''U-853''
On 5 May 1945, while en route from New York to Boston, Atherton along with encountered a U-boat, which was later identified as. The battle took place shortly after U-853 had torpedoed the Boston-based collierBlack Point at 5:40 PM, 5 May 1945. Atherton tracked down U-853 just eight miles off Block Island, Rhode Island, sinking her in just of water. After four depth charge attacks, pieces of broken wood, cork, mattresses, and an oil slick broke the surface. The next day divers were sent down, confirming the sinking of the submarine with the newly developed Hedgehoganti-submarine weapon. Atherton, in conjunction with Moberly, was later credited with destroying U-853. Athertons crewmembers were awarded a Battle Star for the sinking of U-853.
Late war
On 28 May 1945, Atherton sailed for Guantanamo Bay, Cuba. She arrived on 1 June 1945 and held a week of exercises with Escort Division 13 before sailing on 6 June 1945 for the Pacific. Proceeding via the Panama Canal and San Diego, Atherton arrived at Pearl Harbor on 29 June 1945. There, the ship underwent a tender availability and carried out a series of exercises before getting underway on 15 July for the Marianas. She reached Saipan on 26 July 1945 and conducted antisubmarine patrols off Saipan. On 5 August, she got underway for Ulithi, where she operated on picket station until 18 August 1945. Between 19 August and 16 September, Atherton made two round-trip voyages escorting convoys to Okinawa. She was then assigned to rescue station duties out of Saipan which lasted through the end of the war.
Crew members of Atherton received a bronze "battle star" for the American Campaign Medal for their actions in the sinking of the last German submarine in American waters during World War II.
Japanese service
USS Atherton was transferred to Japan in 1955 and commissioned in the Japan Maritime Self-Defense Force as Hatsuhi. After 20 years in service, she was retired in 1975 and was reverted to the United States Navy.
Philippine service
Atherton was transferred to Philippines in 1978. She was commissioned in Philippine Navy service in 1980 after a refit in South Korea as BRP Rajah Humabon. She was reclassified as patrol frigate and changed the hull number to. She was decommissioned in 1993, but was recommissioned in 1995 with a different hull number. Despite improvements in weapons technology, Humabon retained her World War II vintage armament. She served as the flagship of the Philippine Navy until 2011 and then served in a ceremonial role welcoming foreign warships. As of 2016, Rajah Humabon was one of the oldest naval ships still in active service in the world and her hull number was changed again to. On 15 March 2018 she was decommissioned from the Philippine Navy. It is anticipated she will become a museum ship at Naval Station Sangley Point after full decommissioning.