VISTA (comparative genomics)


VISTA is a collection of databases, tools, and servers that permit extensive comparative genomics analyses.

Background

The VISTA family of tools is developed and hosted at Genomics Division of Lawrence Berkeley National Laboratory. This collaborative effort is supported by the Programs for Genomic Applications grant from the NHLBI/NIH and the Office of Biological and Environmental Research, Office of Science, US Department of Energy.
It was developed from modules supplied by developers at UC Berkeley, Stanford, and UC Davis, and based partly on the Global Alignment program.

Usage

There are multiple VISTA servers, each allowing different types of searches.
Researchers can use the VISTA Browser:
There are more than 28 searchable genomes, including vertebrate, non-vertebrate, plants, fungi, algae, bacteria, and others. More are continually being added. These include:
Pre-computed full scaffold alignments for microbial genomes are available as the VISTA component of IMG developed in the DOE Joint Genome Institute.