The four islands are volcanic, part of the Cameroon Line of volcanoes that extends from Annobón in the southwest, through the islands of São Tomé, Príncipe, and Bioko, and onto the mainland as Mount Cameroon and the volcanoes of the Cameroon Highlands. The rainfall precipitation is due in part to condensation of the ocean mist. São Tomé and Príncipe consists of two volcanic islands in the Gulf of Guinea. Rain forests cover almost three quarters of the total area and can be divided into three zones, named low altitude rainforest, submontane rain forest and evergreen cloud forest. Much of the moist lowland forest has been cleared and currently comprises mainly savannah vegetation in the north and palm plantations and coconut tree plantations in the south. Still, the tropical montane cloud forest remains largely unchanged. The cloud forest is home to low tree of open canopy. São Tomé and Príncipe currently do not have any officially protected area. Most primary forests are still survived thanks to the inaccessibility of the steep slopes in the humid and inhospitable island, which are not suitable for farming activities or for humans to inhabit them. In fact, the primary forest has few exploitable timber resources, in terms of species and size, and not have any pressure for firewood recollection. Príncipe is the northernmost island of this two, and lies closest to the African mainland, with an area of 128 km2. São Tomé is the larger of the two islands, approximately 836 km2, and lies southwest of Príncipe. Annobón is the southernmost island and lies furthest from the African coast, with an area of 17 km2. The islands are mountainous, with the highest peaks reaching to 2,024 meters on São Tomé, 948 meters on Príncipe, and 598 meters on Annobón. Príncipe is the oldest of the islands, with the oldest rocks dating back 31 million years. São Tomé is 14 million years old, and Annobón 4.8 million years old. None of the islands have been connected to mainland Africa. The Tinhosas islands are two unvegetated rocky islets lying 22 km south of Príncipe. Tinhosa Grande has an area of 22 hectares, and reaches 56 meters elevation, and Tinhosa Pequena is 3 hectares in area and 65 meters elevation. Bioko and Annobón are extinct volcanos of which Annobon just rises above sea level 598 m, although politically belongs toEquatorial guinea ecologically it's included.
There are seven amphibian species native to São Tomé and Príncipe, all of them endemic: six frogs and one caecilian, the cobra bobo Schistometopum thomense. Exactly how these species have managed to colonize the islands is not obvious as amphibians generally have low tolerance to sea water. Dispersal by birds or storms seems unlikely, especially for the subterranean caecilian. Instead, it has been suggested that the most plausible explanation is rafting, with floating conglomerations of tree trunks, freshwater aquatic plants, and even soil, during periods when sea surface salinity was lower. A possible source of suitable rafts and freshwater plumes is the Congo River.
Flora
There are about 895 species of vascular plant native to the islands, of which 95 are restricted to São Tomé and 37 occur only on Príncipe. The families Orchidaceae, Rubiaceae and Euphorbiaceae are well represented, as are the genera Calvoa and Begonia. The giant endemic begonias Begonia crateris and Begonia baccata can reach three metres in height. The islands are also rich in ferns. The only gymnosperm is a single endemic species from São Tomé, Podocarpus mannii. Other endemic plants include:
Leea tinctoria, from the grape family Vitaceae
Rainforest covers about 74% of the country. Much of this is secondary forest that has grown on abandoned plantations. A large area of forest is protected by Obo National Park. Other habitats include savanna and mangroves.