Scott was born in Groton, Vermont on April 6, 1839, the son of Thomas Scott and Mary "Polly" Scott. He joined Company K, 3rd Vermont Infantry, a company of militia from nearby St. Johnsbury. When his regiment was activated for three years of federal service, Scott's company initially performed sentry duty in and around Washington, D.C.. While on guard duty near the Chain Bridge on August 31, 1861, Scott was found asleep at his post. He was subsequently court-martialed, and sentenced to be executed. In Scott's defense, he had volunteered to take the place of a comrade the night before and was himself exhausted. These facts were known to the court at the time and figured prominently in newspaper reports, appeals by his superiors for clemency, and his subsequent reprieve. On September 9, Scott was scheduled to be executed. During the proceedings, after the death sentence had been read, a pardon was read, sparing his life. Scott served faithfully with his regiment until the Battle at Lee's Mills where he was mortally wounded charging the "rifle pits". He was eventually interred at Yorktown National Cemetery in Yorktown, Virginia.
The pardon
, a Vermonter serving as Register of the Treasury, was credited with bringing the matter of Scott's court martial to the attention of President Lincoln after he had been asked to do so by several Vermonters serving in the Army. Lincoln agreed with Chittenden's request to pardon Scott, and interceded with General George B. McClellan. McClellan's pardon of Scott read:
HEADQUARTERS OF THE ARMY OF THE POTOMAC Washington, September 8. Private William Scott, of Company K. of the Third regiment of Vermont volunteers, having been found guilty by court martial of sleeping on his post while a sentinel on picket guard, has been sentenced to be shot, and the sentence has been approved and ordered to be executed. The commanding officers of the brigade, the regiment and the company, of the command, together with many other privates and officers of his regiment, have earnestly appealed to the Major-General commanding, to spare the life of the offender, and the President of the United States has expressed a wish that as this is the first condemnation to death in this army for this crime, mercy may be extended to the criminal. This fact, viewed in connection with the inexperience of the condemned as a soldier, his previous good conduct and general good character, and the urgent entreaties made in his behalf, have determined the Major-General commanding to grant the pardon so earnestly prayed for. This act of clemency must not be understood as affording a precedent for any future case. The duty of a sentinel is of such a nature, that its neglect by sleeping upon or deserting his post may endanger the safety of a command, or even of the whole army, and all nations affix to the offence the penalty of death. Private William Scott of Co. K. of the Third regiment of Vermont volunteers, will be released from confinement and returned to duty. By command of Maj.-General McClellan, S. WILLIAMS, Asst. Adjt.-General.
Several historians have researched the story of Scott's conviction, pardon and subsequent death during battle. Carl Sandburg debunked reports of Scott's alleged dramatic last words -- a wish for Lincoln to be told that Scott's conduct had justified Lincoln's pardon, and a prayer for Lincoln's continued well being -- as being highly improbable. According to contemporary records, Scott was mortally wounded by as many as five or six bullets, was in a coma before his death, and could not have uttered anything coherent. Sandburg also debunked dramatic accounts that had Lincoln riding into McClellan's camp to personally deliver Scott's pardon moments before the scheduled execution. Sandburg indicated that Lincoln had not been personally aware of Scott's case. However, research in the 1990s indicated that Lincoln was indeed personally aware of the situation and did in fact intervene on Scott's behalf.