After the defeat of forces loyal to the Tokugawa shogunate during the Boshin War in 1868, the new Meiji government confiscated all lands formerly under direct control of the Shogunate and lands controlled by daimyōs who remained loyal to the Tokugawa cause. These lands accounted for approximately a quarter of the land area of Japan and were reorganized into prefectures with governors appointed directly by the central government.
The second phase in the abolition of the han came in 1869. The movement was spearheaded by Kido Takayoshi of the Chōshū Domain, with the backing of court nobles Iwakura Tomomi and Sanjō Sanetomi. Kido persuaded the lords of Chōshū and of Satsuma, the two leading domains in the overthrow of the Tokugawa, to voluntarily surrender their domains to the Emperor. Between July 25, 1869, and August 2, 1869, fearing that their loyalty would be questioned, the daimyōs of 260 other domains followed suit. Only 14 domains failed to initially comply voluntarily with the return of the domains, and were then ordered to do so by the Court, on threat of military action. In return for surrendering their hereditary authority to the central government, the daimyōs were re-appointed as non-hereditary governors of their former domains, and were allowed to keep ten percent of the tax revenues, based on actual rice production. As governors, the former daimyōs could name subordinates, but only if the subordinates met qualification levels established by the central government. Furthermore, hereditary stipends to their samurai retainers were paid out of the prefectural office by the central government, and not directly by the governor, a move calculated to further weaken the traditional feudal ties. The term daimyō was abolished in July 1869 as well, with the formation of the kazokupeerage system.
Consolidation
Although the former daimyōs had become government employees, they still retained a measure of military and fiscal independence, and enjoyed the customary veneration of their former subjects. This was considered an increasing threat to central authority by Ōkubo Toshimichi and other members of the new Meiji oligarchy, especially with the large number of ex-samurai revolts occurring around the country. In August 1871, Okubo, assisted by Saigō Takamori, Kido Takayoshi, Iwakura Tomomi and Yamagata Aritomo forced through an Imperial Edict which reorganized the 261 surviving ex-feudal domains into three urban prefectures and 302 prefectures. The number was then reduced through consolidation the following year to three urban prefectures and 72 prefectures, and to the present three urban prefectures and 44 prefectures by 1888. The central government accomplished this reorganization by promising the former daimyōs a generous stipend, absorbing the domain's debts, and promising to convert the domain currency to the new national currency at face value. The central treasury proved unable to support such generosity, so in 1874, the ex-daimyo stipend was transformed into government bonds with a face value equivalent to five years' worth of stipends, and paying five percent interest per year. Samurai serving former daimyōs also received tradable government bonds of former salary dependent value. The owners of the bonds received interest until the bonds were reimbursed, which was decided by annual lottery. In 30 years, all bonds for samurais were reimbursed. Makino Nobuaki, a student member of the Iwakura Mission, remarked in his memoirs: "Together with the abolition of the han system, dispatching the Iwakura Mission to America and Europe must be cited as the most important events that built the foundation of our state after the Restoration."
