Rule 5 draft results
This article contains a list of Rule 5 draft results. Players chosen in the Major League Baseball phase of the Rule 5 draft have to remain on their new team's 25-man roster for the entire following MLB season, or they are placed on waivers and offered back to their original team if not claimed. Players chosen in the Minor League Baseball phases of the Rule 5 draft remain with their new organization without restrictions.
Key
Results
| * | All Star Selection |
2019
;Major league phase| Pick | By | Player | Pos | From | Notes |
| 1 | Detroit Tigers | RHP | New York Yankees | ||
| 2 | Baltimore Orioles | RHP | Houston Astros | Returned to Astros | |
| 3 | Miami Marlins | RHP | Washington Nationals | ||
| 4 | Kansas City Royals | RHP | Tampa Bay Rays | Returned to Rays, then traded back to Royals | |
| 5 | Seattle Mariners | RHP | Houston Astros | ||
| 6 | Cincinnati Reds | OF | Oakland Athletics | Returned to Athletics | |
| 7 | San Francisco Giants | RHP | Toronto Blue Jays | ||
| 8 | Philadelphia Phillies | IF | Chicago Cubs | Traded to the Oakland Athletics | |
| 9 | Chicago Cubs | RHP | San Diego Padres | Returned to Padres, then traded back to Cubs | |
| 10 | Boston Red Sox | IF | Houston Astros | ||
| 11 | Baltimore Orioles | RHP | Chicago Cubs | Returned to Cubs |
;Notable players chosen in the minor league phase
- Brock Stewart, RHP, Chicago Cubs from the Toronto Blue Jays
- Jason Krizan, OF, Oakland Athletics from the New York Mets
2018
| Pick | By | Player | Pos | From | Notes |
| 1 | Baltimore Orioles | SS | Oakland Athletics | ||
| 2 | Kansas City Royals | RHP | Tampa Bay Rays | Returned to the Rays | |
| 3 | Chicago White Sox | RHP | Toronto Blue Jays | Traded to the Texas Rangers, and returned to the Blue Jays | |
| 4 | Miami Marlins | RHP | Houston Astros | Returned to the Astros | |
| 5 | Detroit Tigers | RHP | Texas Rangers | Returned to the Rangers | |
| 6 | Cincinnati Reds | IF/OF | Los Angeles Dodgers | Traded to the San Francisco Giants, and returned to the Dodgers | |
| 7 | Texas Rangers | RHP | St. Louis Cardinals | Traded to the Royals, returned to the Cardinals | |
| 8 | San Francisco Giants | LHP | Toronto Blue Jays | Returned to Blue Jays. | |
| 9 | Toronto Blue Jays | RHP | Kansas City Royals | ||
| 10 | New York Mets | RHP | Cleveland Indians | Claimed by Rangers, and returned to Cleveland on July 28, 2019. | |
| 11 | Philadelphia Phillies | SS | Los Angeles Dodgers | Traded to the Baltimore Orioles in exchange for international bonus slot money, and returned to the Dodgers | |
| 12 | Arizona Diamondbacks | RHP | New York Yankees | Returned to the Yankees | |
| 13 | Seattle Mariners | RHP | Colorado Rockies | ||
| 14 | San Francisco Giants | OF | Houston Astros | Returned to the Astros |
;Notable players chosen in the minor league phase
- Braxton Lee, OF, New York Mets from the Miami Marlins
- Luis Lugo, LHP, Chicago Cubs from the Kansas City Royals
- Corban Joseph, 2B, Oakland Athletics from the Baltimore Orioles
- Sam Moll, RHP, San Francisco Giants from the Toronto Blue Jays
- Mark Payton, OF, Oakland Athletics from the New York Yankees
- Chris Mazza, RHP, New York Mets from the Seattle Mariners
- Ian Gardeck, RHP, Tampa Bay Rays from the San Francisco Giants
2017
| Pick | By | Player | Pos | From | Notes |
| 1 | Detroit Tigers | OF | Arizona Diamondbacks | ||
| 2 | San Francisco Giants | RHP | Colorado Rockies | Spent entire season on the disabled list, traded to Marlins, spent another season on the disabled list, returned to Rockies | |
| 3 | Philadelphia Phillies | RHP | Minnesota Twins | Traded to the Pittsburgh Pirates, started the season on the disabled list | |
| 4 | Chicago White Sox | OF | Philadelphia Phillies | Traded to the Texas Rangers, made the Rangers' Opening Day roster | |
| 5 | Cincinnati Reds | RHP | Arizona Diamondbacks | Traded to the Kansas City Royals | |
| 6 | New York Mets | RHP | Tampa Bay Rays | Traded to the Kansas City Royals | |
| 7 | Atlanta Braves | RHP | New York Yankees | Returned to the Yankees | |
| 8 | Pittsburgh Pirates | RHP | Cleveland Indians | Returned to the Indians | |
| 9 | Baltimore Orioles | LHP | New York Yankees | Made the Orioles' Opening Day roster, returned to the Yankees on April 13 | |
| 10 | Miami Marlins | RHP | Houston Astros | ||
| 11 | Seattle Mariners | 1B | New York Yankees | Returned to the Yankees | |
| 12 | Los Angeles Angels | RHP | Minnesota Twins | Made the Angels' Opening Day roster | |
| 13 | Minnesota Twins | RHP | Miami Marlins | Made the Twins' Opening Day roster, designated for assignment on April 26 | |
| 14 | Arizona Diamondbacks | RHP | San Francisco Giants | ||
| 15 | Houston Astros | LHP/OF | Texas Rangers | Returned to the Rangers | |
| 16 | Baltimore Orioles | RHP | Chicago Cubs | Made the Orioles' Opening Day roster | |
| 17 | Miami Marlins | RHP | Oakland Athletics | ||
| 18 | Baltimore Orioles | RHP | New York Yankees | Returned to the Yankees |
;Minor league phase
- Mitch Nay, 3B, Cincinnati Reds from the Toronto Blue Jays
- Damien Magnifico, RHP, Pittsburgh Pirates from the Los Angeles Angels
- Martin Červenka, C, Baltimore Orioles from the San Francisco Giants
- Joseph Odom, C, Seattle Mariners from the Atlanta Braves
- Locke St. John, LHP, Texas Rangers from the Detroit Tigers
- Jacob Wilson, 2B, Washington Nationals from the St. Louis Cardinals
- R. C. Orlan, RHP, Cleveland Indians from the Washington Nationals
- Tyler Smith, SS, Atlanta Braves from the Texas Rangers
- Kaleb Fleck, RHP, Washington Nationals from the Arizona Diamondbacks
2016
| Pick | By | Player | Pos | From | Notes |
| 1 | Minnesota Twins | RHP | Milwaukee Brewers | Traded to the San Diego Padres | |
| 2 | Cincinnati Reds | C | New York Yankees | Traded to the San Diego Padres | |
| 3 | San Diego Padres | SS | St. Louis Cardinals | Made the Padres' Opening Day roster | |
| 4 | Tampa Bay Rays | Kevin Gadea | RHP | Seattle Mariners | Started the season on the disabled list, waived and released in August 2019 |
| 5 | Atlanta Braves | RHP | Chicago Cubs | Started the season on the disabled list | |
| 6 | Arizona Diamondbacks | RHP | New York Yankees | Returned to the Yankees | |
| 7 | Milwaukee Brewers | LHP | New York Yankees | Traded to the Chicago Cubs, and returned to the Yankees | |
| 8 | Los Angeles Angels | RHP | Boston Red Sox | Traded to the San Diego Padres, and then to the Minnesota Twins, returned to Boston July 2017 | |
| 9 | Chicago White Sox | RHP | Oakland Athletics | Made the White Sox' Opening Day roster | |
| 10 | Pittsburgh Pirates | LHP | New York Yankees | Returned to the Yankees | |
| 11 | Detroit Tigers | LHP | Kansas City Royals | Elected free agency after waived by Detroit, and resigned with Detroit | |
| 12 | Baltimore Orioles | OF | Boston Red Sox | Returned to the Red Sox | |
| 13 | Toronto Blue Jays | RHP | Kansas City Royals | Started the season on the disabled list and returned to the Royals | |
| 14 | Boston Red Sox | SS | Colorado Rockies | Started the season on the disabled list | |
| 15 | Cleveland Indians | LHP | Philadelphia Phillies | Returned to the Phillies | |
| 16 | Texas Rangers | RHP | Houston Astros | Made the Rangers' Opening Day roster, returned to Astros | |
| 17 | Cincinnati Reds | C | Minnesota Twins | Made the Reds' Opening Day roster | |
| 18 | Baltimore Orioles | OF | Cleveland Indians | Started the season on the disabled list |
;Minor league phase – notable players
- Ty Hensley, RHP, Tampa Bay Rays from the New York Yankees
- Anthony Bemboom, C, Colorado Rockies from the Los Angeles Angels
- Cal Towey, OF, Miami Marlins from the Los Angeles Angels
- Austin Wilson, OF, St. Louis Cardinals from the Seattle Mariners
- Nick Maronde, LHP, Miami Marlins from the Cleveland Indians
- Colten Brewer, RHP, New York Yankees from the Pittsburgh Pirates
- Brian Moran, LHP, Baltimore Orioles from the Atlanta Braves
- Alex Yarbrough, 2B, Miami Marlins from the Los Angeles Angels
2015
| Pick | By | Player | Pos | From | Notes |
| 1 | Philadelphia Phillies | OF | Tampa Bay Rays | Remained with the Phillies for the entire season | |
| 2 | Cincinnati Reds | OF | New York Yankees | Returned to the New York Yankees | |
| 3 | Atlanta Braves | LHP | New York Yankees | Returned to the New York Yankees | |
| 4 | Colorado Rockies | RHP | St. Louis Cardinals | Traded to the San Diego Padres, remained with the Padres for the entire season | |
| 5 | Milwaukee Brewers | 2B | Oakland Athletics | Returned to the Oakland Athletics | |
| 6 | Oakland Athletics | OF | Seattle Mariners | Traded to the San Diego Padres | |
| 7 | San Diego Padres | RHP | Cleveland Indians | Returned to the Cleveland Indians | |
| 8 | Baltimore Orioles | OF | Tampa Bay Rays | Remained with the Orioles for the entire season | |
| 9 | Los Angeles Angels | RHP | Pittsburgh Pirates | Remained with the Angels for the entire season | |
| 10 | Toronto Blue Jays | RHP | San Francisco Giants | Remained with the Blue Jays for the entire season | |
| 11 | St. Louis Cardinals | RHP | New York Mets | Remained with the Cardinals for the entire season | |
| 12 | Philadelphia Phillies | LHP | Kansas City Royals | Returned to the Kansas City Royals | |
| 13 | Cincinnati Reds | LHP | Los Angeles Angels | Returned to the Los Angeles Angels | |
| 14 | Milwaukee Brewers | RHP | Minnesota Twins | Returned to the Minnesota Twins | |
| 15 | San Diego Padres | RHP | Chicago White Sox | Returned to the White Sox | |
| 16 | Los Angeles Angels | 1B | Baltimore Orioles |
;Minor league phases – notable players
- Ariel Hernandez, RHP, Cincinnati Reds from the Arizona Diamondbacks
- Enderson Franco, RHP, Atlanta Braves from the Miami Marlins
- Brian Moran, LHP Cleveland Indians from the Seattle Mariners
- Zack Cox, 3B, Washington Nationals from the Miami Marlins
- Yefry Ramírez, RHP, New York Yankees from the Arizona Diamondbacks
- David Freitas, C, Chicago Cubs from the Baltimore Orioles
- John Brebbia, RHP, St. Louis Cardinals from the Arizona Diamondbacks
- D. J. Johnson, RHP, Los Angeles Angels from the Miami Marlins
2014
| Pick | By | Player | Pos | From | Notes |
| 1 | Arizona Diamondbacks | C | Tampa Bay Rays | ||
| 2 | Colorado Rockies | IF | Miami Marlins | Traded to the Oakland Athletics | |
| 3 | Texas Rangers | OF | Houston Astros | ||
| 4 | Houston Astros | RHP | Boston Red Sox | Traded to the Baltimore Orioles | |
| 5 | Minnesota Twins | RHP | Atlanta Braves | ||
| 6 | Boston Red Sox | RHP | Houston Astros | Traded to the Kansas City Royals, claimed by the San Diego Padres, returned to the Astros | |
| 7 | Chicago Cubs | SS | Colorado Rockies | Traded to the Los Angeles Angels | |
| 8 | Philadelphia Phillies | IF | Texas Rangers | ||
| 9 | Miami Marlins | LHP | Chicago Cubs | Claimed by the Atlanta Braves | |
| 10 | New York Mets | LHP | Minnesota Twins | ||
| 11 | Atlanta Braves | RHP | Colorado Rockies | Did not spend 90 days on active roster. Needed about 2 months on the active roster to remain with the Braves | |
| 12 | Seattle Mariners | LHP | Houston Astros | ||
| 13 | Baltimore Orioles | RHP | New York Mets | Claimed by the Texas Rangers, made the Rangers' Opening Day roster, returned to the Mets | |
| 14 | Philadelphia Phillies | LHP | Pittsburgh Pirates | Outrighted to the minors by the Phillies, but opted for free agency |
;Minor league phase – notable players
- Tim Crabbe, RHP, Arizona Diamondbacks from the Cincinnati Reds
- Greg Peavey, RHP, Minnesota Twins from the New York Mets
- Sean Halton, OF, Baltimore Orioles from the Milwaukee Brewers
- Brett Jackson, OF, San Francisco Giants from the Arizona Diamondbacks
- Randy Fontanez, RHP, Los Angeles Dodgers from the New York Mets
- Kentrail Davis, OF, Los Angeles Angels from the Milwaukee Brewers
2013
| Pick | By | Player | Pos | From | Notes |
| 1 | Houston Astros | LHP | Arizona Diamondbacks | Sent to the San Diego Padres as the player to be named later for Anthony Bass, Returned to the Diamondbacks | |
| 2 | Chicago White Sox | C | Washington Nationals | ||
| 3 | Philadelphia Phillies | RHP | Arizona Diamondbacks | Returned to the Diamondbacks | |
| 4 | Colorado Rockies | RHP | New York Yankees | ||
| 5 | Toronto Blue Jays | LHP | Seattle Mariners | Traded to the Los Angeles Angels | |
| 6 | New York Mets | RHP | Philadelphia Phillies | Traded to the Los Angeles Dodgers, Claimed off waivers by the Rangers, Returned to the Phillies | |
| 7 | Milwaukee Brewers | LHP | Pittsburgh Pirates | ||
| 8 | Arizona Diamondbacks | RHP | Chicago Cubs | Returned to the Cubs during spring training | |
| 9 | Baltimore Orioles | 3B | Boston Red Sox | Returned to the Red Sox, later traded to Orioles |
;Minor league phase – notable players
- Justin Bour, 1B, Miami Marlins from the Chicago Cubs
- Evan Crawford, LHP, Chicago White Sox from the Toronto Blue Jays
- Kevin Mattison, OF, Milwaukee Brewers from the Miami Marlins
- Julio Borbón, OF, Baltimore Orioles from the Chicago Cubs
- Russell Wilson, 2B, Texas Rangers from the Colorado Rockies
- Enderson Franco, RHP, Tampa Bay Rays from the Houston Astros
- Tim Atherton, RHP, Oakland Athletics from the Minnesota Twins
- Omar Narváez, C, Chicago White Sox from the Tampa Bay Rays
- Richard Bleier, LHP, Toronto Blue Jays from the Texas Rangers
- A. J. Morris, RHP, Pittsburgh Pirates from the Chicago Cubs
2012
| Pick | By | Player | Pos | From | Notes |
| 1 | Houston Astros | RHP | Boston Red Sox | ||
| 2 | Chicago Cubs | RHP | Cleveland Indians | ||
| 3 | Colorado Rockies | LHP | Washington Nationals | Returned to the Nationals | |
| 4 | Minnesota Twins | RHP | Boston Red Sox | ||
| 5 | Cleveland Indians | 1B | Texas Rangers | Returned to the Rangers | |
| 6 | Miami Marlins | OF | Los Angeles Dodgers | ||
| 7 | Boston Red Sox | 2B | Washington Nationals | Traded to Detroit Tigers, returned to the Nationals | |
| 8 | New York Mets | LHP | Tampa Bay Rays | Traded to Detroit Tigers, acquired from the Rays and outrighted to the minor leagues | |
| 9 | Arizona Diamondbacks | RHP | Chicago Cubs | Returned to the Cubs | |
| 10 | Philadelphia Phillies | OF | Arizona Diamondbacks | Returned to the Diamondbacks | |
| 11 | Chicago White Sox | IF | Los Angeles Angels | ||
| 12 | Baltimore Orioles | LHP | Cleveland Indians | ||
| 13 | Texas Rangers | RHP | Colorado Rockies | Returned to the Rockies | |
| 14 | Houston Astros | 1B | San Diego Padres | Claimed on waivers by the Oakland Athletics | |
| 15 | Miami Marlins | LHP | Tampa Bay Rays | Returned to Tampa Bay |
;Minor league phases – notable players
- Eric Farris, 2B, Seattle Mariners from the Milwaukee Brewers
- Robbie Widlansky, 1B, Los Angeles Angels from the Baltimore Orioles
- Tommy Mendonca, 3B, Oakland Athletics from the Texas Rangers
- Ryan Dennick, LHP, Cincinnati Reds from the Kansas City Royals
- Federico Castañeda, RHP, San Diego Padres from the Kansas City Royals
- Efraín Nieves, LHP, Toronto Blue Jays from the Detroit Tigers
2011
| Pick | By | Player | Pos | From | Notes |
| 1 | Houston Astros | RHP | New York Mets | ||
| 2 | Minnesota Twins | RHP | Chicago White Sox | Returned to Chicago, later signed with the Fukuoka SoftBank Hawks in Japan | |
| 3 | Seattle Mariners | LHP | Milwaukee Brewers | ||
| 4 | Baltimore Orioles | INF | Chicago Cubs | ||
| 5 | Kansas City Royals | LHP | Boston Red Sox | Traded to the New York Yankees for cash. | |
| 6 | Chicago Cubs | RHP | Philadelphia Phillies | ||
| 7 | Pittsburgh Pirates | SS | Detroit Tigers | ||
| 8 | Atlanta Braves | LHP | Los Angeles Angels | ||
| 9 | St. Louis Cardinals | OF | Washington Nationals | Claimed off waivers by the Minnesota Twins and later returned to Washington. | |
| 10 | Boston Red Sox | SS | Chicago Cubs | Traded to the Houston Astros for Marco Duarte. | |
| 11 | Arizona Diamondbacks | RHP | Pittsburgh Pirates | Rights permanently acquired by Arizona from Pittsburgh in exchange for Robby Rowland. | |
| 12 | New York Yankees | RHP | Washington Nationals |
;Minor league phase – notable players
- Aaron Poreda, LHP, Pittsburgh Pirates from the San Diego Padres
- Barret Browning, LHP, St. Louis Cardinals from the Los Angeles Angels
- Matt Buschmann, RHP, Washington Nationals from the San Diego Padres
2010
| Pick | By | Player | Pos | From | Notes |
| 1 | Pittsburgh Pirates | SS | Cleveland Indians | Returned to Cleveland on April 29, 2011. Reacquired by Pittsburgh on June 21. | |
| 2 | Seattle Mariners | RHP | Cleveland Indians | Returned to Cleveland on March 25, 2011. | |
| 3 | Arizona Diamondbacks | LHP | San Francisco Giants | ||
| 4 | Baltimore Orioles | RHP | Milwaukee Brewers | Returned to Milwaukee on March 24, 2011. | |
| 5 | Kansas City Royals | RHP | Pittsburgh Pirates | ||
| 6 | Washington Nationals | RHP | New York Mets | Returned to New York Mets on October 18, 2011. | |
| 7 | Chicago Cubs | RHP | Los Angeles Angels | Traded to Texas on December 9, 2010. | |
| 8 | Houston Astros | RHP | Tampa Bay Rays | ||
| 9 | Milwaukee Brewers | RHP | Baltimore Orioles | Returned to Baltimore on March 24, 2011 | |
| 10 | New York Mets | 2B | Toronto Blue Jays | Returned to Toronto on April 21, 2011, then traded to Colorado on April 22, 2011. | |
| 11 | San Diego Padres | RHP | New York Yankees | Returned to New York Yankees on March 14, 2011. | |
| 12 | Minnesota Twins | LHP | Atlanta Braves | Rights acquired by Minnesota from Atlanta in exchange for Billy Bullock. | |
| 13 | New York Yankees | LHP | Los Angeles Angels | Claimed off waivers by Kansas City on March 13, 2011. Returned to Los Angeles Angels on March 27. | |
| 14 | Tampa Bay Rays | LHP | Boston Red Sox | Claimed off waivers by Toronto on March 12, 2011, and by Tampa Bay on March 14. Returned to Boston on March 28. | |
| 15 | Philadelphia Phillies | IF | Washington Nationals | ||
| 16 | Washington Nationals | RHP | St. Louis Cardinals | Returned to St. Louis on May 23, 2011. | |
| 17 | Houston Astros | RHP | New York Yankees | Returned to New York Yankees on March 27, 2011. | |
| 18 | New York Mets | RHP | Baltimore Orioles | ||
| 19 | New York Yankees | RHP | Boston Red Sox | Returned to Boston on March 13, 2011. |
;Minor league phases – notable players
- Dashenko Ricardo, C, San Francisco Giants from the Baltimore Orioles
- Quintin Berry, OF, New York Mets from the San Diego Padres
2009
| Pick | By | Player | Pos | From | Notes |
| 1 | Washington Nationals | OF | Los Angeles Dodgers | Acquired by the New York Yankees as the player to be named later in the trade for Brian Bruney. Returned to Los Angeles on March 22, 2010. | |
| 2 | Pittsburgh Pirates | OF | Florida Marlins | Returned to Marlins on May 4, 2010 | |
| 3 | Baltimore Orioles | LHP | San Francisco Giants | Acquired by the Texas Rangers as the player to be named later in the trade for Kevin Millwood. Texas traded Edwin Escobar to San Francisco to retain his rights and outrighted him to the minors | |
| 4 | Kansas City Royals | LHP | Atlanta Braves | Outrighted to the minor leagues after Atlanta declined to reclaim him | |
| 5 | Cleveland Indians | RHP | Arizona Diamondbacks | ||
| 6 | Arizona Diamondbacks | LHP | New York Yankees | ||
| 7 | New York Mets | RHP | Philadelphia Phillies | Sold to the Los Angeles Dodgers for cash on day of draft | |
| 8 | Houston Astros | 3B | Boston Red Sox | Acquired by the Florida Marlins as the player to be named later for Matt Lindstrom. Returned to Boston on March 21, 2010. | |
| 9 | Oakland Athletics | RHP | Los Angeles Angels | Returned to Los Angeles on March 15, 2010 | |
| 10 | Toronto Blue Jays | RHP | Washington Nationals | Returned to Washington on March 18, 2010. | |
| 11 | Milwaukee Brewers | LHP | Cleveland Indians | Milwaukee traded Omar Aguilar to Cleveland to retain his rights. Lofgren was then outrighted to the minor leagues. | |
| 12 | Chicago Cubs | RHP | St. Louis Cardinals | Outrighted to the minor leagues after St. Louis declined to reclaim him. | |
| 13 | Tampa Bay Rays | LHP | Boston Red Sox | Traded to Los Angeles Dodgers on December 10, 2009, returned to Boston on March 15, 2010 | |
| 14 | Seattle Mariners | RHP | New York Yankees | Designated for assignment on May 31, 2010, claimed off waivers by the Kansas City Royals | |
| 15 | San Francisco Giants | RHP | Baltimore Orioles | Returned to Baltimore March 16, 2010. | |
| 16 | St. Louis Cardinals | LHP | Cincinnati Reds | Returned to Cincinnati on March 18, 2010. | |
| 17 | Philadelphia Phillies | RHP | Los Angeles Angels |
;Minor league phase – notable players
- Brian Horwitz, OF, Cleveland Indians from the San Francisco Giants
2008
| Pick | By | Player | Pos | From | Notes |
| 1 | Washington Nationals | RHP | Cincinnati Reds | ||
| 2 | Seattle Mariners | INF | New York Yankees | Returned to the Yankees on April 2, 2009 | |
| 3 | San Diego Padres | SS | Colorado Rockies | ||
| 4 | Pittsburgh Pirates | LHP | Chicago Cubs | ||
| 5 | Baltimore Orioles | C | Milwaukee Brewers | Traded to the Houston Astros for cash considerations. Retained by Houston after Milwaukee declined to accept him back on March 21, 2009. | |
| 6 | San Francisco Giants | RHP | St. Louis Cardinals | Started the season with San Francisco, but later designated for assignment and claimed by the San Diego Padres on April 10, 2009 | |
| 7 | Cincinnati Reds | RHP | Colorado Rockies | Traded to the Chicago Cubs for cash considerations. | |
| 8 | Detroit Tigers | LHP | Pittsburgh Pirates | Returned to the Pirates on March 29, 2009 | |
| 9 | Kansas City Royals | LHP | Minnesota Twins | Traded to the Seattle Mariners for cash considerations. Returned to Twins on April 1, 2009 | |
| 10 | Oakland Athletics | CF | San Francisco Giants | ||
| 11 | Arizona Diamondbacks | C | Detroit Tigers | ||
| 12 | Florida Marlins | LHP | New York Yankees | Returned to Yankees March 16, 2009 | |
| 13 | Houston Astros | LHP | Kansas City Royals | Returned to Royals on March 31, 2009 | |
| 14 | Minnesota Twins | RHP | New York Yankees | The Twins traded Charles Nolte to New York for Jones' rights. | |
| 15 | New York Mets | RHP | Los Angeles Angels | Claimed off waivers by the Texas Rangers April 22, 2009 | |
| 16 | Milwaukee Brewers | RHP | Tampa Bay Rays | Returned to Tampa Bay on March 19, 2009 | |
| 17 | Philadelphia Phillies | RHP | Los Angeles Angels | Returned to Anaheim on April 1, 2009 | |
| 18 | Boston Red Sox | RHP | Los Angeles Angels | Missed the entire season due to Tommy John surgery | |
| 19 | Tampa Bay Rays | RHP | Chicago White Sox | Returned to Chicago White Sox on March 23, 2009 | |
| 20 | San Diego Padres | RHP | New York Yankees | Returned to Yankees on March 29, 2009 | |
| 21 | New York Mets | RHP | Baltimore Orioles | Released by Mets after Baltimore refused to take him back |
;Minor league phases – notable players
- Ricardo Nanita, OF, Washington Nationals from the Chicago White Sox
- Guilder Rodríguez, SS, Texas Rangers from the Milwaukee Brewers
- Dave Shinskie, RHP, Toronto Blue Jays from the Minnesota Twins
2007
| Pick | By | Player | Pos | From | Notes |
| 1 | Tampa Bay Rays | RHP | Minnesota Twins | Traded to Chicago Cubs on December 6, 2007, claimed off waivers by Philadelphia Phillies on March 28, 2008, returned to Minnesota on April 12, 2008 | |
| 2 | Pittsburgh Pirates | RHP | Tampa Bay Rays | Remained with the Pirates after Pittsburgh negotiated to retain his rights. | |
| 3 | Baltimore Orioles | RHP | Detroit Tigers | ||
| 4 | San Francisco Giants | LHP | Boston Red Sox | Claimed by the Cincinnati Reds off waivers on March 12, 2008, returned to Boston on March 28 | |
| 5 | Florida Marlins | RHP | Cincinnati Reds | Traded to the San Diego Padres for cash considerations on December 6, 2007, rights acquired from the Cincinnati Reds and he was outrighted the Padres' minor-league system | |
| 6 | Cincinnati Reds | RHP | Atlanta Braves | Returned to Atlanta on March 10, 2008 | |
| 7 | Washington Nationals | 3B | Cleveland Indians | Returned to Cleveland on March 22, 2008 | |
| 8 | Houston Astros | LHP | Los Angeles Dodgers | ||
| 9 | Oakland Athletics | RHP | Chicago White Sox | Returned to Chicago on April 16, 2008 | |
| 10 | St. Louis Cardinals | OF | Cleveland Indians | ||
| 11 | Toronto Blue Jays | RHP | Chicago Cubs | Returned to Chicago on April 16, 2008 | |
| 12 | Seattle Mariners | RHP | Minnesota Twins | Rights traded to Seattle in exchange for Jair Fernandez on March 29, 2008 | |
| 13 | New York Mets | RHP | Colorado Rockies | Returned to Colorado on March 27, 2008 | |
| 14 | San Diego Padres | RHP | New York Yankees | Returned to New York on March 18, 2008 | |
| 15 | Philadelphia Phillies | LHP | San Francisco Giants | Rights acquired by Philadelphia | |
| 16 | Washington Nationals | OF | Minnesota Twins | Rights traded to Washington on March 23, 2008 in exchange for a player to be named later or cash | |
| 17 | San Diego Padres | 2B | Milwaukee Brewers | Returned to Milwaukee on May 16, 2008 | |
| 18 | Philadelphia Phillies | RHP | Boston Red Sox | Later made a free agent after Boston refused to take him back and eventually given a one-year deal by Boston. |
; Minor league phases – notable players
- Joshua Hill, RHP, Pittsburgh Pirates from the Minnesota Twins
- Levi Romero, RHP, Texas Rangers from the Houston Astros
- Víctor Gárate, LHP, Los Angeles Dodgers from the Houston Astros
- Juan Cedeño, LHP, Detroit Tigers from the Washington Nationals
- Dustin Majewski, OF, Texas Rangers from the Toronto Blue Jays
- Brett Campbell, RHP, Milwaukee Brewers from the Washington Nationals
- Clayton Hamilton, RHP, Texas Rangers from the Pittsburgh Pirates
- Scott Mitchinson, RHP, Oakland Athletics from the Philadelphia Phillies
- Adalberto Méndez, RHP, Florida Marlins from the Chicago Cubs
- Ben Fritz, RHP, Detroit Tigers from the Oakland Athletics
2006
| Pick | Pos. | Player | By | From | Notes |
| 1 | OF | Ryan Goleski | Tampa Bay Devil Rays | Cleveland Indians | Traded to Oakland on December 7, 2006. Returned to Cleveland on March 28, 2007. |
| 2 | RHP | Joakim Soria | Kansas City Royals | San Diego Padres | |
| 3 | OF | Josh Hamilton | Chicago Cubs | Tampa Bay Devil Rays | Later traded by the Cubs to the Cincinnati Reds for cash considerations. |
| 4 | RHP | Sean White | Pittsburgh Pirates | Atlanta Braves | Later traded by the Pirates to the Seattle Mariners for cash considerations. |
| 5 | RHP | Alfredo Simón | Baltimore Orioles | Texas Rangers | Later traded by the Orioles to the Philadelphia Phillies for Adam Donachie and cash considerations. He was returned to the Rangers on March 18, 2007. |
| 6 | C | Jesús Flores | Washington Nationals | New York Mets | |
| 7 | LHP | Edward Campusano | Milwaukee Brewers | Chicago Cubs | Later traded by the Brewers to the Detroit Tigers for cash considerations. He was returned to the Cubs on October 10, 2007. |
| 8 | RHP | Jared Burton | Cincinnati Reds | Oakland Athletics | |
| 9 | RHP | Lincoln Holdzkom | Houston Astros | Chicago Cubs | He was returned to the Cubs on March 11, 2007. |
| 10 | C | Adam Donachie | Philadelphia Phillies | Kansas City Royals | Later traded by the Phillies to the Baltimore Orioles for Alfredo Simón. |
| 11 | RHP | Nick Debarr | Boston Red Sox | Tampa Bay Devil Rays | He was returned to the Devil Rays on March 12, 2007. |
| 12 | INF | Jason Smith | Toronto Blue Jays | Chicago Cubs | |
| 13 | RHP | Kevin Cameron | San Diego Padres | Minnesota Twins | |
| 14 | LHP | Jay Marshall | Oakland Athletics | Chicago White Sox | |
| 15 | INF | Alejandro Machado | Minnesota Twins | Washington Nationals | |
| 16 | INF | Josh Phelps | New York Yankees | Baltimore Orioles | |
| 17 | RHP | Levale Speigner | Washington Nationals | Minnesota Twins | |
| 18 | RHP | Jim Ed Warden | Philadelphia Phillies | Cleveland Indians | He was returned to the Indians on March 28, 2007. |
| 19 | C | Ryan Budde | Philadelphia Phillies | Los Angeles Angels | He was returned to the Angels on April 23, 2007. |
; Triple-A Phase
| Pick | Pos. | Player | By | From |
| 1 | OF | Erold Andrus | Tampa Bay Devil Rays | Minnesota Twins |
| 2 | INF | Richie Lewis | Kansas City Royals | Chicago Cubs |
| 3 | RHP | James Henderson | Chicago Cubs | Washington Nationals |
| 4 | RHP | Moises Robles | Pittsburgh Pirates | New York Mets |
| 5 | LHP | Justin Jones | Washington Nationals | Minnesota Twins |
| 6 | INF | Michael Carlin | Milwaukee Brewers | Pittsburgh Pirates |
| 7 | C | Salomon Manriquez | Colorado Rockies | Washington Nationals |
| 8 | INF | Billy Webb | San Francisco Giants | Washington Nationals |
| 9 | INF | Josh Labandeira | Florida Marlins | Washington Nationals |
| 10 | LHP | Francisco Mateo | Cincinnati Reds | Toronto Blue Jays |
| 11 | INF | Johany Abreu | Texas Rangers | San Francisco Giants |
| 12 | C | Omar Falcon | St. Louis Cardinals | Pittsburgh Pirates |
| 13 | OF | Victor Hall | Philadelphia Phillies | New York Yankees |
| 14 | INF | Brandon Powell | San Diego Padres | Washington Nationals |
| 15 | RHP | Andrew Shipman | Oakland Athletics | Chicago Cubs |
| 16 | RHP | Jesse Floyd | Minnesota Twins | San Francisco Giants |
| 17 | LHP | Ricardo Morales | New York Mets | Washington Nationals |
| 18 | RHP | Cristhian Martínez | Florida Marlins | Detroit Tigers |
| 19 | RHP | Kendy Batista | Texas Rangers | Baltimore Orioles |
| 20 | INF | José Contreras | St. Louis Cardinals | Washington Nationals |
| 21 | RHP | Joshua Alliston | Oakland Athletics | Milwaukee Brewers |
| 22 | INF | Brian Buscher | Minnesota Twins | San Francisco Giants |
| 23 | OF | Lorenzo Scott, Jr. | Florida Marlins | Baltimore Orioles |
| 24 | C | Brian Munhall | Texas Rangers | San Francisco Giants |
; Double-A Phase
| Pick | Pos. | Player | By | From |
| 1 | RHP | Paul Moviel | Tampa Bay Devil Rays | Chicago White Sox |
| 2 | RHP | Kevin Cave | Pittsburgh Pirates | Florida Marlins |
| 3 | RHP | Nicholas Moran | Cincinnati Reds | Tampa Bay Devil Rays |
2005
;Major League Phase| Pick | Pos. | Player | By | From | Notes |
| 1 | LHP | Fabio Castro | Kansas City Royals | Chicago White Sox | Later traded by the Royals to the Texas Rangers for Esteban Germán. |
| 2 | LHP | Luis Enrique Gonzales | Colorado Rockies | Los Angeles Dodgers | - |
| 3 | RHP | Steven Andrade | Tampa Bay Devil Rays | Toronto Blue Jays | Traded to San Diego on December 7, 2005. Claimed off waivers from San Diego by Kansas City on March 28, 2006. Released by Kansas City on June 9, 2006. |
| 4 | RHP | Víctor Santos | Pittsburgh Pirates | Kansas City Royals | Later traded by the Pirates to the Philadelphia Phillies for cash considerations. |
| 5 | RHP | Chris Booker | Detroit Tigers | Washington Nationals | |
| 6 | RHP | Seth Etherton | San Diego Padres | Kansas City Royals | |
| 7 | RHP | Mitchell Wylie | New York Mets | San Francisco Giants | |
| 8 | INF | Dan Uggla | Florida Marlins | Arizona Diamondbacks | Played in MLB All-Star Game same season. |
| 9 | OF | Jason Pridie | Minnesota Twins | Tampa Bay Devil Rays | Returned to Tampa Bay before start of season |
| 10 | RHP | James Vermilyea | Boston Red Sox | Toronto Blue Jays | Returned to Toronto on March 14, 2006 |
| 11 | RHP | Juan Mateo | St. Louis Cardinals | Chicago Cubs | |
| 12 | LHP | Michael Megrew | Florida Marlins | Los Angeles Dodgers |
; Triple-A Phase
| Pick | Pos. | Player | By | From |
| 1 | RHP | Brandon Weeden | Kansas City Royals | Los Angeles Dodgers |
| 2 | LHP | Yorkin Ferreras | Tampa Bay Devil Rays | Chicago Cubs |
| 3 | OF | Jeff Cook | Pittsburgh Pirates | Arizona Diamondbacks |
| 4 | INF | Jason Bourgeois | Seattle Mariners | Atlanta Braves |
| 5 | RHP | Eddie Bonine | Detroit Tigers | San Diego Padres |
| 6 | LHP | Alberto Bastardo | Los Angeles Dodgers | Baltimore Orioles |
| 7 | INF | Eugenio Vélez | San Francisco Giants | Toronto Blue Jays |
| 8 | OF | Jayce Tingler | Texas Rangers | Toronto Blue Jays |
| 9 | LHP | Carlos Jan | Chicago Cubs | Baltimore Orioles |
| 10 | INF | Brandon Powell | Washington Nationals | Kansas City Royals |
| 11 | RHP | Steve Bray | Milwaukee Brewers | Kansas City Royals |
| 12 | RF | Joey Gomes | San Diego Padres | Tampa Bay Devil Rays |
| 13 | INF | Agustin Septimo | Florida Marlins | Milwaukee Brewers |
| 14 | LHP | Jose Lugo | Minnesota Twins | Oakland Athletics |
| 15 | INF | Peter Ramos | Philadelphia Phillies | San Diego Padres |
| 16 | INF | Ronnie Merrill | Oakland Athletics | San Diego Padres |
| 17 | RHP | Ben Diggins | Houston Astros | Milwaukee Brewers |
| 18 | INF | Eric Rodland | Los Angeles Angels | Detroit Tigers |
| 19 | RHP | Víctor Ramos | Boston Red Sox | Chicago Cubs |
| 20 | INF | Tim Hummel | Chicago White Sox | St. Louis Cardinals |
| 21 | C | Iker Franco | St. Louis Cardinals | Atlanta Braves |
| 22 | RHP | Celso Rondon | Tampa Bay Devil Rays | New York Mets |
| 23 | RHP | Henry Cabrera | Pittsburgh Pirates | Boston Red Sox |
| 24 | OF | Alexi Ogando | Texas Rangers | Oakland Athletics |
| 25 | RHP | Geivy Garcia | Chicago Cubs | San Diego Padres |
| 26 | RHP | Jose Sanchez | Washington Nationals | San Francisco Giants |
| 27 | LHP | Andy Santana | San Diego Padres | Chicago Cubs |
| 28 | INF | Jose Ronda | Florida Marlins | Cincinnati Reds |
| 29 | OF | Erold Andrus | Minnesota Twins | New York Yankees |
| 30 | C | John Vanden Berg | Philadelphia Phillies | Milwaukee Brewers |
| 31 | RHP | David Bradley | Oakland Athletics | Milwaukee Brewers |
| 32 | RHP | Jason Richardson | Boston Red Sox | Atlanta Braves |
| 33 | C | Cole Armstrong | Chicago White Sox | Atlanta Braves |
| 34 | INF | Vince Harrison | St. Louis Cardinals | Boston Red Sox |
| 35 | OF | Maiko Loyola | Tampa Bay Devil Rays | Pittsburgh Pirates |
| 36 | C | Richard Suomi | Pittsburgh Pirates | Oakland Athletics |
| 37 | LHP | Estelin Soto | Texas Rangers | Seattle Mariners |
| 38 | INF | Aaron Rifkin | Chicago Cubs | Seattle Mariners |
| 39 | RHP | Josh Perrault | Washington Nationals | Arizona Diamondbacks |
; Double-A Phase
| Pick | Pos. | Player | By | From |
| 1 | RHP | Edgar Huerta | Colorado Rockies | San Diego Padres |
| 2 | OF | Richard Correll | Pittsburgh Pirates | Philadelphia Phillies |
| 3 | OF | Fernando Quijada | Baltimore Orioles | Philadelphia Phillies |
| 4 | INF | Aaron Sisk | San Francisco Giants | Chicago Cubs |
| 5 | RHP | Brian Burgamy | Philadelphia Phillies | San Diego Padres |
| 6 | LHP | Dewon Day | Chicago White Sox | Toronto Blue Jays |
2004
;Major League Phase| Pick | Pos. | Player | By | From | Notes |
| 1 | RHP | Angel Garcia | Arizona Diamondbacks | Minnesota Twins | Immediately traded to Tampa Bay. Returned to Minnesota on March 30, 2005. |
| 2 | LHP | Andrew Sisco | Kansas City Royals | Chicago Cubs | |
| 3 | OF | Tyrell Godwin | Washington Nationals | Toronto Blue Jays | |
| 4 | RHP | Marcos Carvajal | Milwaukee Brewers | Los Angeles Dodgers | Later sold by the Brewers to the Colorado Rockies. |
| 5 | LHP | Matt Merricks | Colorado Rockies | Los Angeles Dodgers | |
| 6 | LHP | Luke Hagerty | Baltimore Orioles | Chicago Cubs | Later traded by the Orioles to the Florida Marlins. |
| 7 | OF | Shane Victorino | Philadelphia Phillies | Los Angeles Dodgers | |
| 8 | LHP | Tyler Johnson | Oakland Athletics | St. Louis Cardinals | |
| 9 | LHP | Ryan Rowland-Smith | Minnesota Twins | Seattle Mariners | |
| 10 | RHP | D. J. Houlton | Los Angeles Dodgers | Houston Astros | |
| 11 | OF | Adam Stern | Boston Red Sox | Atlanta Braves | |
| 12 | INF | Tony Blanco | Washington Nationals | Cincinnati Reds |
; Triple-A Phase
| Pick | Pos. | Player | By | From |
| 1 | RHP | Chris Demaria | Kansas City Royals | Pittsburgh Pirates |
| 2 | INF | Aaron Rifkin | Seattle Mariners | New York Yankees |
| 3 | RHP | Victor Prieto | Washington Nationals | Florida Marlins |
| 4 | RHP | Landon Stockman | Milwaukee Brewers | Cleveland Indians |
| 5 | RHP | Lee Gronkiewicz | Toronto Blue Jays | Cleveland Indians |
| 6 | LHP | Keith Ramsey | Colorado Rockies | Cleveland Indians |
| 7 | RHP | Jean Machi | Tampa Bay Devil Rays | Philadelphia Phillies |
| 8 | RHP | Henry Owens | New York Mets | Pittsburgh Pirates |
| 9 | RHP | Richard Acosta | Pittsburgh Pirates | Baltimore Orioles |
| 10 | RHP | Eric Lohse | Cincinnati Reds | Minnesota Twins |
| 11 | RHP | Neomar Flores | Cleveland Indians | Toronto Blue Jays |
| 12 | RHP | Ryan Warpinski | Chicago White Sox | Florida Marlins |
| 13 | RHP | Rodrigo Rosario | Florida Marlins | Houston Astros |
| 14 | INF | Chris Gomez | Philadelphia Phillies | Baltimore Orioles |
| 15 | LHP | Arturo López | San Diego Padres | Los Angeles Dodgers |
| 16 | RHP | Juan Paschal | Texas Rangers | Baltimore Orioles |
| 17 | OF | Travis Ezi | Chicago Cubs | Florida Marlins |
| 18 | RHP | Víctor Moreno | Oakland Athletics | Minnesota Twins |
| 19 | RHP | Blake Allen | Houston Astros | Cleveland Indians |
| 20 | LHP | Jan Granado | Minnesota Twins | Cincinnati Reds |
| 21 | INF | Antonio Granadillo | Boston Red Sox | St. Louis Cardinals |
| 22 | RHP | Hairo Solis | New York Yankees | San Francisco Giants |
| 23 | INF | Matt Demarco | St. Louis Cardinals | Florida Marlins |
| 24 | INF | Brennan King | Kansas City Royals | Los Angeles Dodgers |
| 25 | INF | Aaron Herr | Seattle Mariners | Atlanta Braves |
| 26 | INF | Edgar González | Washington Nationals | Texas Rangers |
| 27 | RHP | Juan Cerros | Milwaukee Brewers | Cincinnati Reds |
| 28 | LHP | Chris Steinborn | Colorado Rockies | Detroit Tigers |
| 29 | INF | John Raburn | Tampa Bay Devil Rays | Milwaukee Brewers |
| 30 | RHP | Felipe Garcia | Pittsburgh Pirates | Detroit Tigers |
| 31 | OF | Rick Asadoorian | Cincinnati Reds | Texas Rangers |
| 32 | OF | Sean Smith | Chicago White Sox | Pittsburgh Pirates |
| 33 | LHP | Luke Lockwood | Florida Marlins | Washington Nationals |
| 34 | INF | Christian Herrera | San Diego Padres | Pittsburgh Pirates |
| 35 | INF | Vince Harrison | Texas Rangers | Tampa Bay Devil Rays |
| 36 | LHP | Brad Stiles | Chicago Cubs | Kansas City Royals |
| 37 | INF | Andrew Beattie | Oakland Athletics | Philadelphia Phillies |
| 38 | LHP | Nick Bourgeois | Houston Astros | Philadelphia Phillies |
| 39 | INF | Armando Gabino | Minnesota Twins | Cleveland Indians |
| 40 | RHP | José García | St. Louis Cardinals | Texas Rangers |
| 41 | RHP | Cesar Herrera | Kansas City Royals | Texas Rangers |
| 42 | INF | Kervin Jacobo | Seattle Mariners | San Diego Padres |
| 43 | OF | Doc Brooks | Washington Nationals | Arizona Diamondbacks |
| 44 | RHP | T. A. Fulmer | Tampa Bay Devil Rays | Seattle Mariners |
| 45 | OF | Alejandro De Aza | Florida Marlins | Los Angeles Dodgers |
| 46 | RHP | Jon Searles | Chicago Cubs | Washington Nationals |
| 47 | RHP | Wes O'Brien | Houston Astros | Chicago Cubs |
| 48 | RHP | Julio Guerrero | Minnesota Twins | Pittsburgh Pirates |
| 49 | RHP | Richard de los Santos | Tampa Bay Devil Rays | Cleveland Indians |
| 50 | RHP | Josh Teekel | Florida Marlins | St. Louis Cardinals |
| 51 | INF | Brett Wayne | Tampa Bay Devil Rays | Los Angeles Dodgers |
; Double-A Phase
| Pick | Pos. | Player | By | From |
| 1 | C | Jared Price | Kansas City Royals | Los Angeles Dodgers |
| 2 | OF | Jim Kavourias | Washington Nationals | Florida Marlins |
| 3 | RHP | Milton Tavarez | Toronto Blue Jays | Boston Red Sox |
| 4 | OF | Jhonny Rivera | Tampa Bay Devil Rays | Chicago White Sox |
| 5 | RHP | Jared Blasdell | Philadelphia Phillies | Chicago Cubs |
| 6 | RHP | Steve Langone | Boston Red Sox | Los Angeles Dodgers |
| 7 | RHP | Justin Knoff | St. Louis Cardinals | Cincinnati Reds |
| 8 | RHP | Dan Kolb | Washington Nationals | Milwaukee Brewers |
| 9 | RHP | Philip Wilson | Tampa Bay Devil Rays | Los Angeles Angels |
| 10 | OF | Josh Carter | Philadelphia Phillies | San Diego Padres |
| 11 | INF | Dan Dement | Washington Nationals | Tampa Bay Devil Rays |
| 12 | OF | Marcus Nettles | Washington Nationals | San Diego Padres |
2003
;Major League Phase| Pick | Pos. | Player | By | From | Notes |
| 1 | C/INF | Chris Shelton | Detroit Tigers | Pittsburgh Pirates | |
| 2 | OF | Rich Thompson | San Diego Padres | Pittsburgh Pirates | Later traded by the Padres to the Kansas City Royals for number 10 pick, Jason Szuminski. |
| 3 | RHP | Alec Zumwalt | Tampa Bay Devil Rays | Atlanta Braves | Returned to Atlanta on March 17, 2004. |
| 4 | LHP | Frank Brooks | New York Mets | Pittsburgh Pirates | Later traded by the Mets to the Oakland Athletics |
| 5 | RHP | Jeff Bennett | Milwaukee Brewers | Pittsburgh Pirates | |
| 6 | INF | José Bautista | Baltimore Orioles | Pittsburgh Pirates | |
| 7 | RHP | David Mattox | Cincinnati Reds | New York Mets | |
| 8 | RHP | Chris Mabeus | Texas Rangers | Oakland Athletics | |
| 9 | LHP | Matt White | Colorado Rockies | Cleveland Indians | |
| 10 | RHP | Jason Szuminski | Kansas City Royals | Chicago Cubs | Later traded by the Royals to the San Diego Padres for number 2 pick, Rich Thompson. |
| 11 | INF | Andy Fox | Montreal Expos | Texas Rangers | |
| 12 | RHP | Talley Haines | Toronto Blue Jays | Tampa Bay Devil Rays | |
| 13 | RHP | Jason Grilli | Chicago White Sox | Florida Marlins | |
| 14 | INF | Héctor Luna | St. Louis Cardinals | Cleveland Indians | |
| 15 | LHP | Lenny DiNardo | Boston Red Sox | New York Mets | |
| 16 | OF | Willy Taveras | Houston Astros | Cleveland Indians | |
| 17 | LHP | Mike Bumatay | Detroit Tigers | Colorado Rockies | |
| 18 | INF/OF | Luis González | Colorado Rockies | Cleveland Indians | |
| 19 | RHP | Colter Bean | Boston Red Sox | New York Yankees | |
| 20 | RHP | Lino Urdaneta | Detroit Tigers | Cleveland Indians |
; Triple-A Phase
| Pick | Pos. | Player | By | From |
| 1 | INF | Ronnie Merrill | San Diego Padres | Colorado Rockies |
| 2 | RHP | Mark Comolli | Tampa Bay Devil Rays | Toronto Blue Jays |
| 3 | OF | Eric Valent | New York Mets | Cincinnati Reds |
| 4 | IF | Todd West | Cleveland Indians | Milwaukee Brewers |
| 5 | LHP | Ryan Costello | Milwaukee Brewers | Toronto Blue Jays |
| 6 | INF | Jorge Mejia | Cincinnati Reds | Oakland Athletics |
| 7 | OF | Tydus Meadows | Texas Rangers | Kansas City Royals |
| 8 | RHP | Eudy Morel | Colorado Rockies | San Diego Padres |
| 9 | LHP | Willie Collazo | Anaheim Angels | Atlanta Braves |
| 10 | RHP | Justin Lord | Pittsburgh Pirates | Kansas City Royals |
| 11 | RHP | Leslie Nacar | Kansas City Royals | San Francisco Giants |
| 12 | OF | Ender Chavez | Montreal Expos | New York Mets |
| 13 | LHP | Eric Stephenson | Chicago White Sox | Toronto Blue Jays |
| 14 | INF | Luis Jimenez | Los Angeles Dodgers | Baltimore Orioles |
| 15 | INF | Rayner Laya | St. Louis Cardinals | Montreal Expos |
| 16 | RHP | Darwin Soto | Seattle Mariners | San Diego Padres |
| 17 | INF | Kurt Keene | Philadelphia Phillies | Toronto Blue Jays |
| 18 | LHP | Mark Carter | Boston Red Sox | Chicago Cubs |
| 19 | LHP | Shaun Babula | Houston Astros | Baltimore Orioles |
| 20 | RHP | Shawn Sonnier | Oakland Athletics | Chicago Cubs |
| 21 | LHP | John Foster | Chicago Cubs | Milwaukee Brewers |
| 22 | RHP | Joe Orloski | New York Yankees | Milwaukee Brewers |
| 23 | INF | Chris Bass | Florida Marlins | Pittsburgh Pirates |
| 24 | RHP | Omar Anez | San Francisco Giants | New York Mets |
| 25 | LHP | Homero Rivera | San Diego Padres | Montreal Expos |
| 26 | RHP | Tim Corcoran | Tampa Bay Devil Rays | Baltimore Orioles |
| 27 | LHP | Lance Caraccioli | New York Mets | Cleveland Indians |
| 28 | OF | Peter Zoccolillo | Texas Rangers | Milwaukee Brewers |
| 29 | INF | Danny Sandoval | Colorado Rockies | Philadelphia Phillies |
| 30 | INF | Alex Pelaez | Anaheim Angels | San Diego Padres |
| 31 | OF | Gary Thomas | Pittsburgh Pirates | Chicago Cubs |
| 32 | RHP | Honeudis Pereyra | Kansas City Royals | Cleveland Indians |
| 33 | C | John Wilson | Montreal Expos | New York Mets |
| 34 | RHP | Francisco Campos | Chicago White Sox | Milwaukee Brewers |
| 35 | RHP | Beau Dannemiller | Los Angeles Dodgers | Colorado Rockies |
| 36 | C | Omar Falcon | Seattle Mariners | San Diego Padres |
| 37 | OF | Miguel Quintana | Philadelphia Phillies | Cleveland Indians |
| 38 | LHP | Jordan Gerk | Chicago Cubs | Detroit Tigers |
| 39 | OF | Adam Bonner | Florida Marlins | Tampa Bay Devil Rays |
| 40 | INF/OF | Jesse Roman | San Diego Padres | St. Louis Cardinals |
| 41 | C | Adan Munoz | Tampa Bay Devil Rays | Atlanta Braves |
| 42 | RHP | Bryan Edwards | New York Mets | San Diego Padres |
| 43 | INF | Edgar Gonzales | Texas Rangers | Tampa Bay Devil Rays |
| 44 | OF | Alex Gordon | Pittsburgh Pirates | Baltimore Orioles |
| 45 | INF | Anthony Medrano | Montreal Expos | Chicago Cubs |
| 46 | OF | Daylan Holt | Los Angeles Dodgers | Chicago White Sox |
| 47 | LHP | Chris Key | Seattle Mariners | Florida Marlins |
| 48 | RHP | Peter Bauer | Florida Marlins | Toronto Blue Jays |
| 49 | LHP | Ignacio Montano | San Diego Padres | Cleveland Indians |
| 50 | RHP | Richard Bartlett | Los Angeles Dodgers | Baltimore Orioles |
; Double-A Phase
| Pick | Pos. | Player | By | From |
| 1 | RHP | Wes Anderson | Detroit Tigers | Boston Red Sox |
| 2 | C/OF | Mark McRoberts | San Diego Padres | Philadelphia Phillies |
| 3 | INF | Matt Bowser | Tampa Bay Devil Rays | Oakland Athletics |
| 4 | RHP | Robert Garvin | Montreal Expos | San Diego Padres |
| 5 | RHP | Darvin Withers | Chicago White Sox | Oakland Athletics |
| 6 | LHP | Jackson Paz | St. Louis Cardinals | Minnesota Twins |
| 7 | OF | Sergio Contreras | Tampa Bay Devil Rays | Anaheim Angels |
| 8 | INF | Eric Storey | Montreal Expos | Chicago White Sox |
| 9 | INF | Jim Goelz | Florida Marlins | Boston Red Sox |
| 10 | RHP | Somer Gonzalez | Montreal Expos | Arizona Diamondbacks |
2002
;Major League Phase| Pick | Pos. | Player | By | From | Notes |
| 1 | INF | Enrique Cruz | Milwaukee Brewers | New York Mets | |
| 2 | INF | Héctor Luna | Tampa Bay Devil Rays | Cleveland Indians | Returned to Cleveland on March 29, 2003. |
| 3 | RHP | Buddy Hernandez | San Diego Padres | Atlanta Braves | |
| 4 | LHP | Wil Ledezma | Detroit Tigers | Boston Red Sox | |
| 5 | LHP | Derek Thompson | Chicago Cubs | Cleveland Indians | |
| 6 | RHP | D. J. Carrasco | Kansas City Royals | Pittsburgh Pirates | |
| 7 | RHP | Matt Roney | Pittsburgh Pirates | Colorado Rockies | |
| 8 | OF | Victor Hall | Colorado Rockies | Arizona Diamondbacks | |
| 9 | INF | Marshall McDougall | Texas Rangers | Cleveland Indians | |
| 10 | INF | Travis Chapman | Cleveland Indians | Philadelphia Phillies | |
| 11 | RHP | Luke Prokopec | Cincinnati Reds | Los Angeles Dodgers | |
| 12 | RHP | Aquilino López | Toronto Blue Jays | Seattle Mariners | |
| 13 | LHP | Javier López | Boston Red Sox | Arizona Diamondbacks | |
| 14 | RHP | Luis Ayala | Montreal Expos | Arizona Diamondbacks | |
| 15 | INF | José Morban | Minnesota Twins | Texas Rangers | |
| 16 | RHP | Mike Neu | Oakland Athletics | Cincinnati Reds | |
| 17 | RHP | Chris Spurling | Atlanta Braves | Pittsburgh Pirates | |
| 18 | RHP | Matt Ford | Milwaukee Brewers | Toronto Blue Jays | |
| 19 | OF | Shane Victorino | San Diego Padres | Los Angeles Dodgers | |
| 20 | C | Ronny Paulino | Kansas City Royals | Pittsburgh Pirates | |
| 21 | RHP | John Koronka | Texas Rangers | Cincinnati Reds | |
| 22 | RHP | Blake Williams | Cincinnati Reds | St. Louis Cardinals | |
| 23 | RHP | Gary Majewski | Toronto Blue Jays | Chicago White Sox | |
| 24 | LHP | Matt White | Boston Red Sox | Cleveland Indians | |
| 25 | OF | Rontrez Johnson | Oakland Athletics | Texas Rangers | |
| 26 | RHP | Jerome Gamble | Cincinnati Reds | Boston Red Sox | |
| 27 | OF | Jason Dubois | Toronto Blue Jays | Chicago Cubs | |
| 28 | OF | Adrian Brown | Boston Red Sox | Pittsburgh Pirates |
2001
;Major League Phase| Pick | Pos. | Player | By | From | Notes |
| 1 | RHP | Kevin McGlinchy | Tampa Bay Devil Rays | Atlanta Braves | |
| 2 | INF | Luis Ugueto | Pittsburgh Pirates | Florida Marlins | Later traded by the Pirates to the Seattle Mariners for cash considerations. |
| 3 | RHP | Miguel Asencio | Kansas City Royals | Philadelphia Phillies | |
| 4 | RHP | Joe Valentine | Montreal Expos | Chicago White Sox | Later traded by the Expos to the Detroit Tigers for cash considerations. |
| 5 | RHP | Jeff Farnsworth | Detroit Tigers | Seattle Mariners | |
| 6 | RHP | Jorge Sosa | Milwaukee Brewers | Seattle Mariners | Claimed off waivers from Milwaukee by Tampa Bay on March 18, 2002. |
| 7 | LHP | Steve Kent | Anaheim Angels | Seattle Mariners | Sent to Tampa Bay for cash considerations on December 17, 2001. |
| 8 | RHP | Corey Thurman | Toronto Blue Jays | Kansas City Royals | |
| 9 | RHP | Ryan Baerlocher | San Diego Padres | Kansas City Royals | |
| 10 | INF | Jason Grabowski | Oakland Athletics | Seattle Mariners | |
| 11 | INF | Félix Escalona | San Francisco Giants | Houston Astros | Claimed off waivers from San Francisco by Tampa Bay on March 27, 2002. |
| 12 | OF | Ryan Christenson | Milwaukee Brewers | Arizona Diamondbacks |
2000
;Major League Phase| Pick | Pos. | Player | By | From |
| 1 | RHP | Scott Chiasson | Chicago Cubs | Oakland Athletics |
| 2 | RHP | Brandon Knight | Minnesota Twins | New York Yankees |
| 3 | RHP | Ted Rose | Montreal Expos | Cincinnati Reds |
| 4 | INF | Jay Gibbons | Baltimore Orioles | Toronto Blue Jays |
| 5 | OF | Endy Chávez | Kansas City Royals | New York Mets |
| 6 | INF | Jermaine Clark | Detroit Tigers | Seattle Mariners |
| 7 | INF | Donaldo Méndez | San Diego Padres | Houston Astros |
| 8 | LHP | Rendy Espina | Anaheim Angels | Toronto Blue Jays |
| 9 | LHP | José Antonio Núñez | Los Angeles Dodgers | New York Mets |
| 10 | RHP | Julio Santana | New York Mets | San Francisco Giants |
1999
;Major League Phase| Pick | Pos. | Player | By | From | Notes |
| 1 | RHP | Jared Camp | Minnesota Twins | Cleveland Indians | Later traded by the Twins to the Florida Marlins for Johan Santana. |
| 2 | LHP | Johan Santana | Florida Marlins | Houston Astros | Later traded by the Marlins to the Minnesota Twins for Jared Camp. |
| 3 | INF | Damian Rolls | Kansas City Royals | Los Angeles Dodgers | Immediately sent to Tampa Bay as part of a conditional deal. |
| 4 | RHP | Chad Ogea | Tampa Bay Devil Rays | Detroit Tigers | |
| 5 | RHP | Marty McLeary | Montreal Expos | Boston Red Sox | |
| 6 | RHP | Mark Johnson | Detroit Tigers | New York Yankees | |
| 7 | RHP | Derrick Turnbow | Anaheim Angels | Philadelphia Phillies | |
| 8 | OF | Kory DeHaan | San Diego Padres | Pittsburgh Pirates | |
| 9 | LHP | Matt Williams | Milwaukee Brewers | New York Yankees | Returned by Milwaukee to New York May 3, 2000 |
| 10 | OF | Chad Alexander | Seattle Mariners | Houston Astros | |
| 11 | OF | DeWayne Wise | Toronto Blue Jays | Cincinnati Reds | |
| 12 | OF | Bo Porter | Oakland Athletics | Chicago Cubs | |
| 13 | RHP | Brian Smith | Pittsburgh Pirates | Toronto Blue Jays | |
| 14 | LHP | Dave Maurer | San Francisco Giants | San Diego Padres | |
| 15 | LHP | Adrian Burnside | Cincinnati Reds | Los Angeles Dodgers | |
| 16 | RHP | Jim Mann | New York Mets | Toronto Blue Jays | |
| 17 | RHP | Chris Reitsma | Tampa Bay Devil Rays | Boston Red Sox | Returned to Boston on March 28, 2000. |
1998
;Major League Phase| Pick | Pos. | Player | By | From |
| 1 | LHP | Alberto Blanco | Florida Marlins | Houston Astros |
| 2 | INF | David Lamb | Tampa Bay Devil Rays | Baltimore Orioles |
| 3 | RHP | Eric Ludwick | Detroit Tigers | Florida Marlins |
| 4 | OF | Ricky Williams | Montreal Expos | Philadelphia Phillies |
| 5 | INF | Josue Espada | Minnesota Twins | Oakland Athletics |
| 6 | LHP | Scott Sauerbeck | Pittsburgh Pirates | New York Mets |
| 7 | OF | Eric Stuckenschneider | Oakland Athletics | Los Angeles Dodgers |
| 8 | OF | David Miller | Philadelphia Phillies | Cleveland Indians |
| 9 | RHP | Jay Walker Chapman | Chicago White Sox | Minnesota Twins |
| 10 | C | Alberto Castillo | St. Louis Cardinals | Philadelphia Phillies |
| 11 | LHP | Joel Adamson | Boston Red Sox | Oakland Athletics |
| 12 | OF | Glen Barker | Houston Astros | Detroit Tigers |
| 13 | OF | Tyrone Pendergrass | Chicago White Sox | Atlanta Braves |
1997
;Major League Phase| Pick | Pos. | Player | By | From | Notes |
| 1 | INF | Jeff Huson | Seattle Mariners | Colorado Rockies | Released by Seattle July 8, 1998 |
| 2 | LHP | Héctor Mercado | Philadelphia Phillies | Florida Marlins | Later traded by Philadelphia to the New York Mets for Mike Welch |
| 3 | OF | Scott Podsednik | Texas Rangers | Florida Marlins | |
| 4 | RHP | Brian Edmondson | Atlanta Braves | New York Mets | |
| 5 | LHP | Stephen Randolph | Arizona Diamondbacks | New York Yankees | |
| 6 | RHP | Frank Lankford | Los Angeles Dodgers | New York Yankees | Returned by the Dodgers to the Yankees May 15, 1998 |
| 7 | LHP | Sean Runyan | Detroit Tigers | San Diego Padres | |
| 8 | RHP | Keith Glauber | Cincinnati Reds | St. Louis Cardinals | |
| 9 | OF | Luis Saturria | Toronto Blue Jays | St. Louis Cardinals | Returned by the Blue Jays to the Cardinals March 20, 1998 |
| 10 | LHP | Matt Williams | New York Yankees | Tampa Bay Devil Rays | |
| 11 | RHP | Joe Davenport | Chicago White Sox | Toronto Blue Jays |